import java.io.File; import javax.xml.parsers.DocumentBuilderFactory; import org.w3c.dom.Document; import org.w3c.dom.Element; import org.w3c.dom.Node; import org.w3c.dom.NodeList; public class Main { public static void main(String[] argv) throws Exception { DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); factory.setValidating(true); factory.setExpandEntityReferences(false); Document doc = factory.newDocumentBuilder().parse(new File("filename")); Element element = (Element) doc.getElementsByTagName("junk").item(0); element.getParentNode().removeChild(element); } }