Download pub array Free Java Code

.gitignore//from w  w w .j av a 2s. c  o m
.gitmodules
LICENSE.txt
README.txt
build.xml
modules/pub-array-builder/.classpath
modules/pub-array-builder/.gitignore
modules/pub-array-builder/.project
modules/pub-array-builder/LICENSE.txt
modules/pub-array-builder/build-properties.xml
modules/pub-array-builder/build.xml
modules/pub-array-builder/diet-strain-survey-importer-answers.txt
modules/pub-array-builder/example-importer-answers.txt
modules/pub-array-builder/ivy.xml
modules/pub-array-builder/run-builder.bash
modules/pub-array-builder/run-data-importer.bash
modules/pub-array-builder/src/META-INF/MANIFEST.MF
modules/pub-array-builder/src/java/org/jax/pubarray/builder/ExperimentOverviewPanel.form
modules/pub-array-builder/src/java/org/jax/pubarray/builder/ExperimentOverviewPanel.java
modules/pub-array-builder/src/java/org/jax/pubarray/builder/FlatFileDescription.java
modules/pub-array-builder/src/java/org/jax/pubarray/builder/PerGeneImageDirectoriesPanel.form
modules/pub-array-builder/src/java/org/jax/pubarray/builder/PerGeneImageDirectoriesPanel.java
modules/pub-array-builder/src/java/org/jax/pubarray/builder/PerGeneImageDirectoryPanel.form
modules/pub-array-builder/src/java/org/jax/pubarray/builder/PerGeneImageDirectoryPanel.java
modules/pub-array-builder/src/java/org/jax/pubarray/builder/PubArrayBuilderMain.java
modules/pub-array-builder/src/java/org/jax/pubarray/builder/PubArrayWizardController.java
modules/pub-array-builder/src/java/org/jax/pubarray/builder/SelectAndPreviewFlatFilePanel.form
modules/pub-array-builder/src/java/org/jax/pubarray/builder/SelectAndPreviewFlatFilePanel.java
modules/pub-array-builder/src/java/org/jax/pubarray/builder/SelectAnnotationsPanel.form
modules/pub-array-builder/src/java/org/jax/pubarray/builder/SelectAnnotationsPanel.java
modules/pub-array-builder/src/java/org/jax/pubarray/builder/SharedDirectoryContainer.java
modules/pub-array-builder/src/java/org/jax/pubarray/builder/WebAppOutputPanel.form
modules/pub-array-builder/src/java/org/jax/pubarray/builder/WebAppOutputPanel.java
modules/pub-array-builder/src/java/org/jax/pubarray/commandline/ImportDataMain.java
modules/pub-array-builder/src/resources/images/action/add-16x16.png
modules/pub-array-builder/src/resources/images/action/browse-16x16.png
modules/pub-array-builder/src/resources/images/action/edit-16x16.png
modules/pub-array-builder/src/resources/images/action/remove-16x16.png
modules/pub-array-builder/src/web/app/create-war-file.png
modules/pub-array-builder/src/web/app/help.html
modules/pub-array-builder/src/web/app/load-anno-and-stats-panel.png
modules/pub-array-builder/src/web/app/load-data-panel.png
modules/pub-array-builder/src/web/app/load-design-panel.png
modules/pub-array-builder/src/web/app/load-per-gene-image-dirs-panel.png
modules/pub-array-builder/src/web/app/overview-panel.png
modules/pub-array-builder/src/web/app/pub-array.jnlp
modules/pub-array-builder/src/web/index.html
modules/pub-array-core/.classpath
modules/pub-array-core/.gitignore
modules/pub-array-core/.project
modules/pub-array-core/build-properties.xml
modules/pub-array-core/build.xml
modules/pub-array-core/ivy.xml
modules/pub-array-core/src/META-INF/MANIFEST.MF
modules/pub-array-core/src/java/org/jax/pubarray/db/CandidateDatabaseManager.java
modules/pub-array-core/src/java/org/jax/pubarray/db/CandidateTable.java
modules/pub-array-core/src/java/org/jax/pubarray/db/ConnectionManager.java
modules/pub-array-core/src/java/org/jax/pubarray/db/DerbyConnectionManager.java
modules/pub-array-core/src/java/org/jax/pubarray/db/ExperimentMetadata.java
modules/pub-array-core/src/java/org/jax/pubarray/db/HSQLDBConnectionManager.java
modules/pub-array-core/src/java/org/jax/pubarray/db/PerGeneImageDirectoryDescription.java
modules/pub-array-core/src/java/org/jax/pubarray/db/PersistenceManager.java
modules/pub-array-core/src/resources/README.txt
modules/pub-array-gwt-client/.classpath
modules/pub-array-gwt-client/.gitignore
modules/pub-array-gwt-client/.project
modules/pub-array-gwt-client/README.txt
modules/pub-array-gwt-client/build-properties.xml
modules/pub-array-gwt-client/build.xml
modules/pub-array-gwt-client/ivy.xml
modules/pub-array-gwt-client/run-pub-array-query.bash
modules/pub-array-gwt-client/src/META-INF/MANIFEST.MF
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/PubArrayCommon.gwt.xml
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/Filter.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/FilterModelUtil.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/FunctionStoreFilter.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/GeneImageMetadata.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/GxtUtil.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/MatchesAllFunction.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/MatchesAnyFunction.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/ModelBooleanFunction.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/QualifiedColumnMetadata.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/QualifiedColumnMetadataModelUtil.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/Query.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/QueryModelUtil.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/TableColumnMetadata.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/TableColumnMetadataModelUtil.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/TableData.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/TableDataModelUtil.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/TableMetadata.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/TableMetadataModelUtil.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtcommon/client/UserMessage.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/QueryApplication.gwt.xml
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/AnnotationMetadataProxy.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/CachedPagingProxy.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/DataMetadataProxy.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/GraphingService.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/GraphingServiceAsync.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/MyDualListField.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/PerGeneImageContainer.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/ProbeDetailsContainer.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/ProbeIntensityGraphConfiguration.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/QueryApplication.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/QueryFilterTable.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/QueryResultsContainer.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/QueryResultsProxy.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/QueryService.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/QueryServiceAsync.java
modules/pub-array-gwt-client/src/java/org/jax/pubarray/gwtqueryapp/client/TermsOfInterestContainer.java
modules/pub-array-gwt-client/src/www/StrainSurveyHelpFile.doc
modules/pub-array-gwt-client/src/www/StrainSurveyHelpFile.pdf
modules/pub-array-gwt-client/src/www/administration.html
modules/pub-array-gwt-client/src/www/css/pub-array-style.css
modules/pub-array-gwt-client/src/www/images/add-16x16.png
modules/pub-array-gwt-client/src/www/images/alert-16x16.png
modules/pub-array-gwt-client/src/www/images/double-arrow-16x16.png
modules/pub-array-gwt-client/src/www/images/error-16x16.png
modules/pub-array-gwt-client/src/www/images/help-16x16.png
modules/pub-array-gwt-client/src/www/images/ok-16x16.png
modules/pub-array-gwt-client/src/www/images/remove-16x16.png
modules/pub-array-gwt-client/src/www/images/work-16x16.png
modules/pub-array-gwt-client/src/www/index.jsp
modules/pub-array-gwt-server/.classpath
modules/pub-array-gwt-server/.gitignore
modules/pub-array-gwt-server/.project
modules/pub-array-gwt-server/QueryApplication.launch
modules/pub-array-gwt-server/README.txt
modules/pub-array-gwt-server/build-properties.xml
modules/pub-array-gwt-server/build.xml
modules/pub-array-gwt-server/ivy.xml
modules/pub-array-gwt-server/src/META-INF/MANIFEST.MF
modules/pub-array-gwt-server/src/WEB-INF/web.xml
modules/pub-array-gwt-server/src/java/org/jax/pubarray/server/DatabaseServletContextListener.java
modules/pub-array-gwt-server/src/java/org/jax/pubarray/server/DerbyServletContextListener.java
modules/pub-array-gwt-server/src/java/org/jax/pubarray/server/HSQLDBFileServletContextListener.java
modules/pub-array-gwt-server/src/java/org/jax/pubarray/server/HSQLDBResourceServletContextListener.java
modules/pub-array-gwt-server/src/java/org/jax/pubarray/server/gwtquery/GraphingServiceImpl.java
modules/pub-array-gwt-server/src/java/org/jax/pubarray/server/gwtquery/QueryServiceImpl.java
modules/pub-array-gwt-server/src/java/org/jax/pubarray/server/restful/GraphingResource.java
modules/pub-array-gwt-server/src/java/org/jax/pubarray/server/restful/QueryToCsvStreamingOutput.java
modules/pub-array-gwt-server/src/java/org/jax/pubarray/server/restful/TableAdministrationResource.java
modules/pub-array-gwt-server/src/java/org/jax/pubarray/server/restful/TableQueryResource.java
modules/pub-array-gwt-server/src/resources/README.txt
nbproject/project.xml
scripts/changes-readme.txt
scripts/rearrange-pheno-corr.bash
scripts/renameCELFile.lhs
scripts/renameStatsFile.lhs
scripts/stats-file-listing.txt