Download msmexplorer Free Java Code

MSMExplorer/.gitignore//  w  w w . j  a va2  s .  c o m
MSMExplorer/LICENSE
MSMExplorer/QUICK_START
MSMExplorer/README
MSMExplorer/REFERENCE_TUTORIAL.pdf
MSMExplorer/WALKTHROUGH.pdf
MSMExplorer/aux/emma2msmb.py
MSMExplorer/build.xml
MSMExplorer/demos/.DS_Store
MSMExplorer/demos/Ala2RMSD_Hierarchical/.DS_Store
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro/ZMatrix.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro10/Assignments.Fixed.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro10/Assignments.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro10/MacroMapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro10/Mapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro10/Populations.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro10/tCounts.UnSym.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro10/tCounts.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro10/tProb.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro100/Assignments.Fixed.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro100/Assignments.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro100/Mapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro100/Populations.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro100/tCounts.UnSym.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro100/tCounts.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro100/tProb.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro2/Assignments.Fixed.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro2/Assignments.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro2/MacroMapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro2/Mapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro2/Populations.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro2/tCounts.UnSym.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro2/tCounts.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro2/tProb.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro25/Assignments.Fixed.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro25/Assignments.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro25/MacroMapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro25/Mapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro25/Populations.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro25/tCounts.UnSym.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro25/tCounts.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro25/tProb.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro3/Assignments.Fixed.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro3/Assignments.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro3/MacroMapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro3/Mapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro3/Populations.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro3/tCounts.UnSym.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro3/tCounts.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro3/tProb.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro4/Assignments.Fixed.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro4/Assignments.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro4/MacroMapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro4/Mapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro4/Populations.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro4/tCounts.UnSym.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro4/tCounts.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro4/tProb.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro5/Assignments.Fixed.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro5/Assignments.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro5/MacroMapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro5/Mapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro5/Populations.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro5/tCounts.UnSym.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro5/tCounts.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro5/tProb.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro50/Assignments.Fixed.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro50/Assignments.h5
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro50/MacroMapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro50/Mapping.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro50/Populations.dat
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro50/tCounts.UnSym.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro50/tCounts.mtx
MSMExplorer/demos/Ala2RMSD_Hierarchical/Micro50/tProb.mtx
MSMExplorer/demos/Populations200.dat
MSMExplorer/demos/README
MSMExplorer/demos/jmacro200.xml
MSMExplorer/demos/sampleDataCol100.dat
MSMExplorer/demos/sampleDataCol200.dat
MSMExplorer/demos/simple_hierarchy/Macro2/MacroMapping.dat
MSMExplorer/demos/simple_hierarchy/Macro2/Populations.dat
MSMExplorer/demos/simple_hierarchy/Macro2/tProb.mtx
MSMExplorer/demos/simple_hierarchy/Macro4/Populations.dat
MSMExplorer/demos/simple_hierarchy/Macro4/tProb.mtx
MSMExplorer/demos/tProb_200a.macro.dat
MSMExplorer/demos/tutorial/PDBs/State0-0.pdb
MSMExplorer/demos/tutorial/PDBs/State1-0.pdb
MSMExplorer/demos/tutorial/PDBs/State10-0.pdb
MSMExplorer/demos/tutorial/PDBs/State11-0.pdb
MSMExplorer/demos/tutorial/PDBs/State12-0.pdb
MSMExplorer/demos/tutorial/PDBs/State13-0.pdb
MSMExplorer/demos/tutorial/PDBs/State14-0.pdb
MSMExplorer/demos/tutorial/PDBs/State15-0.pdb
MSMExplorer/demos/tutorial/PDBs/State16-0.pdb
MSMExplorer/demos/tutorial/PDBs/State17-0.pdb
MSMExplorer/demos/tutorial/PDBs/State18-0.pdb
MSMExplorer/demos/tutorial/PDBs/State19-0.pdb
MSMExplorer/demos/tutorial/PDBs/State2-0.pdb
MSMExplorer/demos/tutorial/PDBs/State20-0.pdb
MSMExplorer/demos/tutorial/PDBs/State21-0.pdb
MSMExplorer/demos/tutorial/PDBs/State22-0.pdb
MSMExplorer/demos/tutorial/PDBs/State23-0.pdb
MSMExplorer/demos/tutorial/PDBs/State24-0.pdb
MSMExplorer/demos/tutorial/PDBs/State3-0.pdb
MSMExplorer/demos/tutorial/PDBs/State4-0.pdb
MSMExplorer/demos/tutorial/PDBs/State5-0.pdb
MSMExplorer/demos/tutorial/PDBs/State6-0.pdb
MSMExplorer/demos/tutorial/PDBs/State7-0.pdb
MSMExplorer/demos/tutorial/PDBs/State8-0.pdb
MSMExplorer/demos/tutorial/PDBs/State9-0.pdb
MSMExplorer/demos/tutorial/Populations.dat
MSMExplorer/demos/tutorial/images/State0.png
MSMExplorer/demos/tutorial/images/State1.png
MSMExplorer/demos/tutorial/images/State10.png
MSMExplorer/demos/tutorial/images/State11.png
MSMExplorer/demos/tutorial/images/State12.png
MSMExplorer/demos/tutorial/images/State13.png
MSMExplorer/demos/tutorial/images/State14.png
MSMExplorer/demos/tutorial/images/State15.png
MSMExplorer/demos/tutorial/images/State16.png
MSMExplorer/demos/tutorial/images/State17.png
MSMExplorer/demos/tutorial/images/State18.png
MSMExplorer/demos/tutorial/images/State19.png
MSMExplorer/demos/tutorial/images/State2.png
MSMExplorer/demos/tutorial/images/State20.png
MSMExplorer/demos/tutorial/images/State21.png
MSMExplorer/demos/tutorial/images/State22.png
MSMExplorer/demos/tutorial/images/State23.png
MSMExplorer/demos/tutorial/images/State24.png
MSMExplorer/demos/tutorial/images/State3.png
MSMExplorer/demos/tutorial/images/State4.png
MSMExplorer/demos/tutorial/images/State5.png
MSMExplorer/demos/tutorial/images/State6.png
MSMExplorer/demos/tutorial/images/State7.png
MSMExplorer/demos/tutorial/images/State8.png
MSMExplorer/demos/tutorial/images/State9.png
MSMExplorer/demos/tutorial/nodeDataCol.dat
MSMExplorer/demos/tutorial/tProb.mtx
MSMExplorer/dist/MSMExplorer.jar
MSMExplorer/dist/README.TXT
MSMExplorer/dist/lib/5macro.xml
MSMExplorer/dist/lib/batik-awt-util.jar
MSMExplorer/dist/lib/batik-codec.jar
MSMExplorer/dist/lib/batik-dom.jar
MSMExplorer/dist/lib/batik-ext.jar
MSMExplorer/dist/lib/batik-svggen.jar
MSMExplorer/dist/lib/batik-swing.jar
MSMExplorer/dist/lib/batik-util.jar
MSMExplorer/dist/lib/batik-xml.jar
MSMExplorer/dist/lib/commons-math-2.1.jar
MSMExplorer/dist/lib/images/.DS_Store
MSMExplorer/dist/lib/images/README
MSMExplorer/dist/lib/images/State0.png
MSMExplorer/dist/lib/images/State1.png
MSMExplorer/dist/lib/images/State2.png
MSMExplorer/dist/lib/images/State3.png
MSMExplorer/dist/lib/images/State4.png
MSMExplorer/dist/lib/lucene-1.4.3.jar
MSMExplorer/dist/lib/mtj-0.9.12.jar
MSMExplorer/dist/lib/prefuse.jar
MSMExplorer/dist/lib/splash.jpg
MSMExplorer/dist/lib/swing-layout-1.0.4.jar
MSMExplorer/lib/5macro.xml
MSMExplorer/lib/CopyLibs-2/org-netbeans-modules-java-j2seproject-copylibstask.jar
MSMExplorer/lib/batik-awt-util.jar
MSMExplorer/lib/batik-codec.jar
MSMExplorer/lib/batik-dom.jar
MSMExplorer/lib/batik-ext.jar
MSMExplorer/lib/batik-svggen.jar
MSMExplorer/lib/batik-swing.jar
MSMExplorer/lib/batik-util.jar
MSMExplorer/lib/batik-xml.jar
MSMExplorer/lib/commons-math-2.1.jar
MSMExplorer/lib/images/.DS_Store
MSMExplorer/lib/images/README
MSMExplorer/lib/images/State0.png
MSMExplorer/lib/images/State1.png
MSMExplorer/lib/images/State2.png
MSMExplorer/lib/images/State3.png
MSMExplorer/lib/images/State4.png
MSMExplorer/lib/junit/junit-3.8.2-api.zip
MSMExplorer/lib/junit/junit-3.8.2.jar
MSMExplorer/lib/junit_4/junit-4.5-api.zip
MSMExplorer/lib/junit_4/junit-4.5-src.jar
MSMExplorer/lib/junit_4/junit-4.5.jar
MSMExplorer/lib/lucene-1.4.3.jar
MSMExplorer/lib/mtj-0.9.12.jar
MSMExplorer/lib/nblibraries.properties
MSMExplorer/lib/prefuse.jar
MSMExplorer/lib/prefuse.src.jar
MSMExplorer/lib/splash.jpg
MSMExplorer/lib/swing-layout/swing-layout-1.0.4-doc.zip
MSMExplorer/lib/swing-layout/swing-layout-1.0.4-src.zip
MSMExplorer/lib/swing-layout/swing-layout-1.0.4.jar
MSMExplorer/make.sh
MSMExplorer/manifest.mf
MSMExplorer/msm2gml/main.cpp
MSMExplorer/msm2gml/msm2gml
MSMExplorer/nbproject/build-impl.xml
MSMExplorer/nbproject/genfiles.properties
MSMExplorer/nbproject/private/config.properties
MSMExplorer/nbproject/private/private.properties
MSMExplorer/nbproject/private/private.xml
MSMExplorer/nbproject/project.properties
MSMExplorer/nbproject/project.xml
MSMExplorer/run.sh
MSMExplorer/src/edu/stanford/folding/msmexplorer/MSMConstants.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/MSMExplorer.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/MSMExplorerLauncher.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/AbstractMSMReader.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/ColumnChooserDialog.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/DatGraphReader.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/EQProbReader.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/ExportMSMImageAction.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/MSMIOLib.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/MtxGraphReader.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/MtxTableReader.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/NewlineDelimitedReader.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/SVGWriter.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/hierarchy/HierarchyBundle.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/hierarchy/HierarchyIOLib.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/io/hierarchy/HierarchySketcher.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/tpt/TPTFactoryCM.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/tpt/TPTSetupBox.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/tpt/TPTWindow.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/AggForceDirectedLayout.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/FlexDataColorAction.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/MutableDouble.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/aggregate/AggregateDragControl.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/aggregate/AggregateLayout.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/aggregate/AggregatePrioritySorter.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/axis/AxisLabelLabelLayout.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/axis/AxisRotateRenderer.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/axis/AxisSettingsDialog.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/movie/PDBFrame.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/render/ImageToggleLabelRenderer.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/render/SelfRefEdgeRenderer.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/render/TextImageItemRenderer.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/stats/GraphStatsManager.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/stats/GraphStatsWindow.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/ui/ColorSwatch.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/ui/FitOverviewListener.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/ui/FocusControlWithDeselect.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/ui/JValueSliderFlammable.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/ui/PDBServer.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/ui/Picture.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/ui/RotatedLabel.java
MSMExplorer/src/edu/stanford/folding/msmexplorer/util/ui/VisualizationSettingsDialog.java
MSMExplorer/workspace
README