Download ShortCircuitGA Free Java Code

.gitignore// ww w. j a v  a2  s . c  o  m
GeneticAlgorithm/.classpath
GeneticAlgorithm/.gitignore
GeneticAlgorithm/.project
GeneticAlgorithm/.settings/org.eclipse.jdt.core.prefs
GeneticAlgorithm/.settings/org.eclipse.m2e.core.prefs
GeneticAlgorithm/Makefile
GeneticAlgorithm/pom.xml
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/concurrent/InvokerThread.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/gui/ScatterPlot.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/gui/TimePlot.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/ArrayGenericUtils.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/ArrayNumberUtils.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/Condition.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/DoubleValueGenerator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/EqualUtils.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/HashUtils.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/IntegerRange.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/IntegerValueGenerator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/InterruptListener.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/ListComparator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/ListValueGenerator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/MathUtils.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/OrderedPair.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/Pair.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/Pause.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/ProcessBuilderUtils.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/SetUtils.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/ShapeMatcher.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/StringBufferOutputStream.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/Trigger.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/UnorderedPair.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/common/utils/ValueGenerator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/data/FileLoader.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/data/History.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/data/ListHistory.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/data/NullHistory.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/crossover/Crossover.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/crossover/OnePointCrossover.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/crossover/UniformCrossover.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/distribution/Distribution.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/distribution/DistributionMember.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/fitness/AbstractFitness.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/fitness/Fitness.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/fitness/FitnessFactory.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/fitness/FitnessGenerator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/fitness/FitnessGeneratorFactory.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/fitness/HaltableFitness.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/fitness/ProxyFitness.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/fitness/ProxyFitnessFactory.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/fitness/ShortCircuitFitness.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/fitness/ShortCircuitFitnessFactory.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/Gene.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/GeneticFactory.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/Genotype.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/IntervalGene.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/IntervalGeneticFactory.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/StandardGene.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/StandardGeneticFactory.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/StandardGenotype.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/interpreter/CompositeGeneInterpreter.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/interpreter/ConstantGeneInterpreter.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/interpreter/GeneInterpreter.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/interpreter/GeneInterpreterMap.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/gene/interpreter/SimpleGeneInterpreter.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/mutator/DecayingIntervalMutator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/mutator/IntervalMutator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/mutator/Mutator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/mutator/StandardMutator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/reproduction/Reproduction.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/select/BonusSelect.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/select/ParetoRankedSelect.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/select/Select.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/select/SelectUtils.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/geneticalgorithm/select/StandardSelect.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/geneticalgorithm/ActivityDetailFitnessGenerator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/geneticalgorithm/ActivityFitnessGenerator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/geneticalgorithm/ActivitySummaryFitnessGenerator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetGeneticAlgorithm.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetQuickFitness.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetQuickFitnessFactory.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetRandomGenerator.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetTraceFitness.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetTraceFitnessFactory.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetTraceFitnessIntermediary.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/geneticalgorithm/ScriptUpdater.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/model/FileData.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/model/NeuroJetActivity.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/model/NeuroJetNeuronBuffer.java
GeneticAlgorithm/src/main/java/edu/virginia/cs/neurojet/view/PlotUtils.java
GeneticAlgorithm/src/main/resources/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetGeneticAlgorithm.properties
GeneticAlgorithm/src/test/java/edu/virginia/cs/SandboxTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/TestUtils.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/concurrent/InvokerThreadTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/gui/JFreeChartTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/ArrayGenericUtilsTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/ArrayNumberUtilsTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/DoubleValueGeneratorTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/EqualUtilsTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/HashUtilsTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/IntegerRangeTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/IntegerValueGeneratorTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/ListValueGeneratorTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/MathUtilsTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/OrderedPairTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/PauseTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/ProcessBuilderUtilsTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/SetUtilsTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/ShapeMatcherTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/common/utils/UnorderedPairTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/data/FileLoaderTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/data/ListHistoryTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/data/NullHistoryTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/crossover/OnePointCrossoverTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/distribution/DistributionMemberTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/distribution/DistributionTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/fitness/AbstractFitnessTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/gene/IntervalGeneticFactoryTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/gene/ShortCircuitFitnessFactoryTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/gene/StandardGeneticFactoryTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/gene/StandardGenotypeTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/gene/interpreter/CompositeGeneInterpreterTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/gene/interpreter/ConstantGeneInterpreterTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/gene/interpreter/GeneInterpreterMapTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/gene/interpreter/SimpleGeneInterpreterTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/mutator/DecayingIntervalMutatorTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/mutator/IntervalMutatorTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/mutator/StandardMutatorTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/select/ParetoRankedSelectTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/geneticalgorithm/select/StandardSelectTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/neurojet/geneticalgorithm/ActivityDetailFitnessGeneratorTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetGeneticAlgorithmTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetQuickFitnessFactoryTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetRandomGeneratorTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetTraceFitnessFactoryTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetTraceFitnessTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/neurojet/model/NeuroJetActivityTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/neurojet/model/NeuroJetNeuronBufferTest.java
GeneticAlgorithm/src/test/java/edu/virginia/cs/neurojet/view/PlotUtilsTest.java
GeneticAlgorithm/src/test/resources/.gitignore
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/NeuroJet
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/cp
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/echo
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/fit1_a.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/fit1_b.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/fit1_c.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/fit1_d.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/fit2_100.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/fit2_150.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/fit2_200.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/fit2_250.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/fit2_300.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/fit2_50.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/sleep
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/trace_full.nj
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/trnWithinAct.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/trnWithinAct.dat.ready
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/tstBuff.dat
GeneticAlgorithm/src/test/resources/edu/virginia/cs/data/tstBuff.dat.ready
GeneticAlgorithm/src/test/resources/edu/virginia/cs/neurojet/geneticalgorithm/NeuroJetGeneticAlgorithmTest.properties
README.md
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scripts/getStdDevData.m
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scripts/getTargetFitness_2.m
scripts/getTargetFitness_3.m
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scripts/plotPuffAvg.m
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scripts/randAnalyze.m
scripts/readActivity.m
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scripts/runAndZip.sh
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