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Description
Slib is a JAVA library dedicated to semantic data analysis. The project currently focuses on semantic data represented as semantic graphs (networks). The Semantic Measures Library (SML) is a sub project of the Slib.
Source Files
The download file slib-master.zip has the following entries.
.gitignore/*from w w w . j a va 2 s.c om*/
README.md
pom.xml
sglib/README.md
sglib/pom.xml
sglib/sglib-algo/pom.xml
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/accessor/GraphAccessor.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/extraction/rvf/AncestorEngine.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/extraction/rvf/DescendantEngine.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/extraction/rvf/RVF.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/extraction/rvf/RVF_DAG.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/extraction/rvf/RVF_TAX.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/extraction/rvf/instances/InstancesAccessor.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/extraction/rvf/instances/impl/InstanceAccessor_RDF_TYPE.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/metric/DepthAnalyserAG.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/package-info.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/reduction/dag/GraphReduction_DAG_Ranwez_2011.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/reduction/dag/GraphReduction_Transitive.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/shortest_path/Dijkstra.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/traversal/GraphTraversal.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/traversal/classical/BFS.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/traversal/classical/DFS.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/utils/Color.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/utils/GAction.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/utils/GActionType.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/utils/GActionValidator.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/utils/GraphActionExecutor.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/utils/RooterDAG.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/validator/dag/Path.java
sglib/sglib-algo/src/main/java/slib/sglib/algo/graph/validator/dag/ValidatorDAG.java
sglib/sglib-io/CheckableValidity.java
sglib/sglib-io/Parametrable.java
sglib/sglib-io/pom.xml
sglib/sglib-io/src/main/java/slib/sglib/io/conf/GDataConf.java
sglib/sglib-io/src/main/java/slib/sglib/io/conf/GraphConf.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/GraphLoader.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/GraphLoaderGeneric.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/annot/GraphLoader_TSVannot.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/bio/gaf2/EvidenceCodeRules.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/bio/gaf2/GraphLoader_GAF_2.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/bio/mesh/GraphLoader_MESH_XML.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/bio/mesh/MeshConcept.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/bio/mesh/MeshXMLHandler.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/bio/obo/GraphLoader_OBO_1_2.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/bio/obo/utils/OboRelationship.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/bio/obo/utils/OboTerm.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/bio/obo/utils/OboType.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/bio/snomedct/GraphLoaderSnomedCT_RF2.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/csv/CSV_Mapping.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/csv/CSV_StatementTemplate.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/csv/CSV_StatementTemplate_Constraint.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/csv/GraphLoader_CSV.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/csv/StatementTemplateElement.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/csv/StatementTemplate_Constraint_Type.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/rdf/RDFLoader.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/rdf/SlibRdfHandler.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/slibformat/GraphLoader_SLIB.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/utils/filter/graph/Filter.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/utils/filter/graph/FilterCst.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/utils/filter/graph/FilterGraph.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/utils/filter/graph/gaf2/FilterGraph_GAF2.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/utils/filter/graph/gaf2/FilterGraph_GAF2_cst.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/utils/filter/graph/metrics/FilterGraph_Metrics.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/utils/filter/graph/metrics/FilterGraph_Metrics_cst.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/utils/filter/graph/repo/FilterRepository.java
sglib/sglib-io/src/main/java/slib/sglib/io/loader/wordnet/GraphLoader_Wordnet.java
sglib/sglib-io/src/main/java/slib/sglib/io/plotter/GraphPlotter_Graphviz.java
sglib/sglib-io/src/main/java/slib/sglib/io/util/GActionValidator.java
sglib/sglib-io/src/main/java/slib/sglib/io/util/GDataValidator.java
sglib/sglib-io/src/main/java/slib/sglib/io/util/GFormat.java
sglib/sglib-model-impl/pom.xml
sglib/sglib-model-impl/src/main/java/slib/sglib/model/impl/graph/elements/Edge.java
sglib/sglib-model-impl/src/main/java/slib/sglib/model/impl/graph/memory/GraphMemory.java
sglib/sglib-model-impl/src/main/java/slib/sglib/model/impl/graph/weight/GWS_impl.java
sglib/sglib-model-impl/src/main/java/slib/sglib/model/impl/repo/GraphRepositoryMemory.java
sglib/sglib-model-impl/src/main/java/slib/sglib/model/impl/repo/URIFactoryMemory.java
sglib/sglib-model/pom.xml
sglib/sglib-model/src/main/java/slib/sglib/model/graph/G.java
sglib/sglib-model/src/main/java/slib/sglib/model/graph/elements/E.java
sglib/sglib-model/src/main/java/slib/sglib/model/graph/utils/Direction.java
sglib/sglib-model/src/main/java/slib/sglib/model/graph/utils/WalkConstraint.java
sglib/sglib-model/src/main/java/slib/sglib/model/graph/weight/GWS.java
sglib/sglib-model/src/main/java/slib/sglib/model/repo/GraphRepository.java
sglib/sglib-model/src/main/java/slib/sglib/model/repo/URIFactory.java
sglib/sglib-model/src/main/java/slib/sglib/model/voc/SLIBVOC.java
sglib/sglib-model/src/main/resources/log4j.xml
sglib/sglib-test/pom.xml
sglib/sglib-test/src/main/resources/log4j.xml
sglib/sglib-test/src/test/java/slib/sglib/test/algo/graph/SLIB_UnitTestValues.java
sglib/sglib-test/src/test/java/slib/sglib/test/algo/graph/TestSetUtils.java
sglib/sglib-test/src/test/java/slib/sglib/test/algo/graph/TestUtils.java
sglib/sglib-test/src/test/java/slib/sglib/test/algo/graph/extraction/TestReachableVerticesFinder.java
sglib/sglib-test/src/test/java/slib/sglib/test/algo/graph/metric/TestDepthAnalyser.java
sglib/sglib-test/src/test/java/slib/sglib/test/algo/graph/reduction/dag/Test_GraphReduction_Transitive.java
sglib/sglib-test/src/test/java/slib/sglib/test/algo/graph/shortest_path/Test_Shortest_path.java
sglib/sglib-test/src/test/java/slib/sglib/test/algo/graph/validator/dag/TestValidatorDAG.java
sglib/sglib-test/src/test/resources/BINARY_PROTEIN_PROTEIN_INTERACTIONS.txt
sglib/sglib-test/src/test/resources/graph/obo/gene_ontology_ext.obo
sglib/sglib-test/src/test/resources/graph/others/go
sglib/sglib-test/src/test/resources/graph/others/gtest
sglib/sglib-test/src/test/resources/graph/others/gtest.gv
sglib/sglib-test/src/test/resources/graph/others/gtest.pdf
sglib/sglib-test/src/test/resources/graph/sgl/g.dot
sglib/sglib-test/src/test/resources/graph/sgl/g.pdf
sglib/sglib-test/src/test/resources/graph/sgl/g.rdf
sglib/sglib-test/src/test/resources/log4j.xml
sglib/sglib-test/src/test/resources/modules/ontoFocus/exemple.csv
sglib/sglib-test/src/test/resources/modules/ontoFocus/orthomamGO.csv
sglib/sglib-test/src/test/resources/modules/ontoFocus/qGO_obo.txt
sglib/sglib-test/src/test/resources/modules/ontoFocus/qGO_owl.txt
sglib/sglib-test/src/test/resources/modules/ontoFocus/qGO_tiny.txt
sglib/sglib-test/src/test/resources/modules/ontoFocus/qHPO_obo.txt
sglib/sglib-utils/pom.xml
sglib/sglib-utils/src/main/java/slib/sglib/utils/WalkConstraintGeneric.java
sglib/sglib-utils/src/main/java/slib/sglib/utils/WalkConstraintUtils.java
sglib/sglib-utils/src/main/resources/log4j.xml
slib-dist/pom.xml
slib-dist/src/main/assembly/all-jar.xml
slib-examples/nb-configuration.xml
slib-examples/nbactions-GO_groupwise.xml
slib-examples/nbactions-SnomedCT_ex.xml
slib-examples/pom.xml
slib-examples/src/main/java/slib/examples/sml/README.md
slib-examples/src/main/java/slib/examples/sml/general/GraphExample.java
slib-examples/src/main/java/slib/examples/sml/general/SMComputation.java
slib-examples/src/main/java/slib/examples/sml/go/SMComputationGO_groupwise.java
slib-examples/src/main/java/slib/examples/sml/go/SMComputationGO_groupwise_million.java
slib-examples/src/main/java/slib/examples/sml/go/SMComputationGO_pairwise.java
slib-examples/src/main/java/slib/examples/sml/mesh/MeSHExample_XML.java
slib-examples/src/main/java/slib/examples/sml/snomedct/SMComputationSnomedCT.java
slib-examples/src/main/java/slib/examples/sml/wordnet/SMcomputationWordnet.java
slib-examples/src/main/java/slib/examples/sml/yago/SMComputationYago.java
slib-examples/src/main/resources/graph_test.nt
slib-examples/src/main/resources/log4j.xml
slib-indexer/pom.xml
slib-indexer/src/main/java/slib/indexer/IndexElementBasic.java
slib-indexer/src/main/java/slib/indexer/IndexHash.java
slib-indexer/src/main/java/slib/indexer/IndexedElement.java
slib-indexer/src/main/java/slib/indexer/mesh/Indexer_MESH_XML.java
slib-indexer/src/main/java/slib/indexer/mesh/MeshConcept.java
slib-indexer/src/main/java/slib/indexer/mesh/MeshXMLHandler.java
slib-indexer/src/main/java/slib/indexer/obo/IndexerOBO.java
slib-indexer/src/main/java/slib/indexer/snomed_ct/IndexerSNOMEDCT_RF2.java
slib-indexer/src/main/java/slib/indexer/wordnet/IndexerWordNetBasic.java
slib-sml/README.md
slib-sml/pom.xml
slib-sml/src/main/java/slib/sml/package-info.java
slib-sml/src/main/java/slib/sml/sm/core/engine/SMProxResultStorage.java
slib-sml/src/main/java/slib/sml/sm/core/engine/SM_Engine.java
slib-sml/src/main/java/slib/sml/sm/core/measures/Sim_Groupwise.java
slib-sml/src/main/java/slib/sml/sm/core/measures/Sim_Groupwise_Direct.java
slib-sml/src/main/java/slib/sml/sm/core/measures/Sim_Groupwise_Indirect.java
slib-sml/src/main/java/slib/sml/sm/core/measures/Sim_Pairwise.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Bader_2003.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Batet_2010.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Braun_Blanquet_1932.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Dice_1945.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Jaccard_1901.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Knappe_2004.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Korbel_2002.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Maryland_Bridge_2003.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Ochiai_1957.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Simpson_1960.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Sokal_Sneath_1963.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_Tversky_1977.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/framework/dag/Sim_Framework_DAG_Set_abstract.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/groupwise/dag/Sim_groupwise_DAG_Ali_Deane.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/groupwise/dag/Sim_groupwise_DAG_GIC.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/groupwise/dag/Sim_groupwise_DAG_LP.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/groupwise/dag/Sim_groupwise_DAG_Lee_2004.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/groupwise/dag/Sim_groupwise_DAG_NTO.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/groupwise/dag/Sim_groupwise_DAG_NTO_MAX.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/groupwise/dag/Sim_groupwise_DAG_TO.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/groupwise/dag/Sim_groupwise_DAG_UI.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/groupwise/dag/Sim_groupwise_DAG_abstract.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/Sim_Pairwise_DAG.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/Sim_DAG_edge_abstract.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/Sim_pairwise_DAG_edge_Kyogoku_basic_2011.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/Sim_pairwise_DAG_edge_Leacock_Chodorow_1998.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/Sim_pairwise_DAG_edge_Pekar_Staab_2002.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/Sim_pairwise_DAG_edge_Rada_1989.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/Sim_pairwise_DAG_edge_Rada_LCA_1989.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/Sim_pairwise_DAG_edge_Stojanovic_2001.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/Sim_pairwise_DAG_edge_Wu_Palmer_1994.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/experimental/Sim_pairwise_DAG_edge_Al_Mubaid_2006.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/experimental/Sim_pairwise_DAG_edge_G_SESAME_2007.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/experimental/Sim_pairwise_DAG_edge_Resnik_1995.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/experimental/Sim_pairwise_DAG_edge_Slimani_2006.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/edge_based/utils/SimDagEdgeUtils.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/hybrid/Sim_DAG_hybrid_abstract.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/hybrid/experimental/Sim_pairwise_DAG_edge_Li_2003.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/hybrid/experimental/Sim_pairwise_DAG_hybrid_Ranwez_2006.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/hybrid/experimental/Sim_pairwise_DAG_hybrid_Wang_2007.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/hybrid/utils/SimDagHybridUtils.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_DAG_node_abstract.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_Constants.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_Feature_Tversky_Contrast_Model.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_Feature_Tversky_Ratio_Model.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_GL.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_IC_Prop_Tversky_Contrast_Model.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_IC_Prop_Tversky_Ratio_Model.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_IC_Tversky_Contrast_Model.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_IC_Tversky_Ratio_Model.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_Jaccard_3W_IC.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_Jaccard_IC.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_Jiang_Conrath_1997.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_Jiang_Conrath_1997_Norm.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_Lin_1998.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_Resnik_1995.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_Schlicker_2006_SimRel.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/Sim_pairwise_DAG_node_Sim_IC_2010.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/experimental/Sim_pairwise_DAG_node_GL_GraSM.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/experimental/Sim_pairwise_DAG_node_Harispe_2013.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/experimental/Sim_pairwise_DAG_node_Lin_1998_GraSM.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/experimental/Sim_pairwise_DAG_node_Mazandu_2012.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/experimental/Sim_pairwise_DAG_node_Resnik_1995_Ancestors.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/experimental/Sim_pairwise_DAG_node_Resnik_1995_Descendants.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/experimental/Sim_pairwise_DAG_node_Resnik_1995_GraSM.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/experimental/Sim_pairwise_DAG_node_Schlicker_3WJaccard_SimRel.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/experimental/Sim_pairwise_DAG_node_Schlicker_GL_SimRel.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/experimental/Sim_pairwise_DAG_node_Schlicker_Jaccard_SimRel.java
slib-sml/src/main/java/slib/sml/sm/core/measures/graph/pairwise/dag/node_based/experimental/Sim_pairwise_DAG_node_Schlicker_Tversky_SimRel.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/groupwise/direct/Sim_groupwise_Random.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/groupwise/direct/vector/VectorSpaceModel.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/groupwise/indirect/Sim_groupwise_Average.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/groupwise/indirect/Sim_groupwise_BestMatchAverage.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/groupwise/indirect/Sim_groupwise_BestMatchMax.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/groupwise/indirect/Sim_groupwise_Lord_2003.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/groupwise/indirect/Sim_groupwise_Max.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/groupwise/indirect/Sim_groupwise_Min.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/groupwise/indirect/experimental/Sim_groupwise_AVERAGE_NORMALIZED_GOSIM.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/groupwise/indirect/experimental/Sim_groupwise_MAX_NORMALIZED_GOSIM.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/groupwise/indirect/experimental/Sim_groupwise_general_abstract.java
slib-sml/src/main/java/slib/sml/sm/core/measures/others/pairwise/Sim_pairwise_Random.java
slib-sml/src/main/java/slib/sml/sm/core/measures/string/LevenshteinDistance.java
slib-sml/src/main/java/slib/sml/sm/core/measures/string/LevenshteinSimilarity.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/IC.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/annot/IC_annot_resnik_1995.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/annot/IC_annot_resnik_1995_Normalized.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/annot/IC_probOccurence_propagatted.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/annot/ICcorpus.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_ancestors_norm.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_depth_max_linear.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_depth_max_nonlinear.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_depth_min_nonlinear.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_harispe_2012.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_probOccurence.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_probOccurence_propagatted.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_resnik_1995.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_resnik_unpropagatted_1995.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_sanchez_2011.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_sanchez_2011_b_adapted.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_seco_2004.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICi_zhou_2008.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/topo/ICtopo.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/utils/IC_Conf_Corpus.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/utils/IC_Conf_Topo.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/utils/ICconf.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/utils/IcUtils.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/ic/utils/ProbOccurence.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/utils/LogBasedMetric.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/utils/LogBasedMetricInterface.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/vector/VectorWeight_Chabalier_2007.java
slib-sml/src/main/java/slib/sml/sm/core/metrics/vector/VectorWeight_Chabalier_Propaggated.java
slib-sml/src/main/java/slib/sml/sm/core/utils/LCAFinder.java
slib-sml/src/main/java/slib/sml/sm/core/utils/LCAFinderImpl.java
slib-sml/src/main/java/slib/sml/sm/core/utils/MathSML.java
slib-sml/src/main/java/slib/sml/sm/core/utils/OperatorConf.java
slib-sml/src/main/java/slib/sml/sm/core/utils/SMConstants.java
slib-sml/src/main/java/slib/sml/sm/core/utils/SMParams.java
slib-sml/src/main/java/slib/sml/sm/core/utils/SMconf.java
slib-sml/src/main/java/slib/sml/sm/core/utils/SMutils.java
slib-sml/src/main/java/slib/sml/sm/package-info.java
slib-sml/src/main/java/slib/sml/smutils/ResultsMerger.java
slib-sml/src/main/java/slib/sml/smutils/SQLiteUtils.java
slib-sml/src/main/resources/scripts/R/cor.R
slib-sml/src/main/resources/scripts/R/cor.py
slib-sml/src/main/resources/scripts/R/discriminative_power/plotDiscriminativePower.R
slib-sml/src/main/resources/scripts/R/heatmap/heatmap.R
slib-sml/src/main/resources/scripts/R/others/plotDepthDistribution.R
slib-sml/src/main/resources/scripts/R/others/plotICDistribution.R
slib-sml/src/main/resources/scripts/R/roc/rocr.R
slib-sml/src/main/resources/scripts/python/html_result.py
slib-sml/src/main/resources/scripts/python/kegg_trembl_mapping/human_pathways_prots_kegg_mapping
slib-sml/src/main/resources/scripts/python/kegg_trembl_mapping/keggToUniprot.py
slib-sml/src/main/resources/scripts/python/kegg_trembl_mapping/pathways_prots
slib-sml/src/main/resources/scripts/python/kegg_trembl_mapping/yeast_pathways_prots
slib-sml/src/main/resources/scripts/python/pfam_uniprot_kb/buildUniprotKB_pfam_Mapping.py
slib-sml/src/test/java/test/TestGraphEngine.java
slib-sml/src/test/java/test/TestGroupwiseIndirectMeasures.java
slib-sml/src/test/resources/graph_test.dot
slib-sml/src/test/resources/graph_test.pdf
slib-sml/src/test/resources/graph_test.slib
slib-sml/src/test/resources/graph_test_expected_values.csv
slib-sml/src/test/resources/log4j.xml
slib-sml/src/test/resources/unit_test.zip
slib-tools/pom.xml
slib-tools/slib-tools-module/pom.xml
slib-tools/slib-tools-module/src/main/java/slib/tools/module/CmdHandler.java
slib-tools/slib-tools-module/src/main/java/slib/tools/module/FilterBuilderGeneric.java
slib-tools/slib-tools-module/src/main/java/slib/tools/module/GenericConfBuilder.java
slib-tools/slib-tools-module/src/main/java/slib/tools/module/GlobalConfPattern.java
slib-tools/slib-tools-module/src/main/java/slib/tools/module/ModuleConf.java
slib-tools/slib-tools-module/src/main/java/slib/tools/module/ModuleCst.java
slib-tools/slib-tools-module/src/main/java/slib/tools/module/OptionComparator.java
slib-tools/slib-tools-module/src/main/java/slib/tools/module/ToolCmdHandlerCst.java
slib-tools/slib-tools-module/src/main/java/slib/tools/module/XMLConfLoaderGeneric.java
slib-tools/slib-tools-module/src/main/java/slib/tools/module/XMLConstUtils.java
slib-tools/slib-tools-module/src/main/java/slib/tools/module/XML_ModuleConfLoader.java
slib-tools/slib-tools-module/src/main/java/slib/tools/module/XmlTags.java
slib-tools/slib-tools-ontofocus/Readme.md
slib-tools/slib-tools-ontofocus/pom.xml
slib-tools/slib-tools-ontofocus/src/main/java/slib/tools/ontofocus/cli/OntoFocusCmdHandler.java
slib-tools/slib-tools-ontofocus/src/main/java/slib/tools/ontofocus/cli/debug/App.java
slib-tools/slib-tools-ontofocus/src/main/java/slib/tools/ontofocus/cli/utils/OntoFocusCmdHandlerCst.java
slib-tools/slib-tools-ontofocus/src/main/java/slib/tools/ontofocus/core/OntoFocus.java
slib-tools/slib-tools-ontofocus/src/main/java/slib/tools/ontofocus/core/utils/OntoFocusCst.java
slib-tools/slib-tools-ontofocus/src/main/java/slib/tools/ontofocus/core/utils/QueryEntryURI.java
slib-tools/slib-tools-ontofocus/src/main/resources/log4j.xml
slib-tools/slib-tools-ontofocus/src/main/resources/ontofocus-constants.properties
slib-tools/slib-tools-ontofocus/src/test/java/slib/tools/ontofocus/TestOntoFocusReduction.java
slib-tools/slib-tools-sml-toolkit/README.md
slib-tools/slib-tools-sml-toolkit/pom.xml
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/SmlModuleCLI.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/SmlToolKitCli.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/SmlToolKitCliCst.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/SmlToolKitCst.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/conf/xml/loader/Sm_XMLConfLoader.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/conf/xml/utils/Sm_XML_Cst.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/SmCli.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/ActionParamsUtils.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/ActionsParams.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/ConceptToConcept_Thread.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/EntityToEntity_Thread.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/FileWriterUtil.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/QueryConceptsIterator.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/SML_SM_module_XML_block_conf.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/SMQueryParam.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/SMutils.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/SmCmdHandler.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/SmCmdHandlerCst.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/SmToolkitCst.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/ThreadResultsQueryLoader.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/core/utils/XMLConfUtils.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/profile/go/SmProfileGOCst.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/profile/go/SmProfileGOHandler.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/profile/go/SmProfile_GO.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/profile/go/SmToolkitGOCst.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/profile/mesh/utils/SmProfileMeSHCst.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/profile/mesh/utils/SmProfileMeSHHandler.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/profile/mesh/utils/SmProfile_MeSH.java
slib-tools/slib-tools-sml-toolkit/src/main/java/slib/tools/smltoolkit/sm/cli/profile/mesh/utils/SmToolkitMeSHCst.java
slib-tools/slib-tools-sml-toolkit/src/main/resources/log4j.debug.xml
slib-tools/slib-tools-sml-toolkit/src/main/resources/log4j.deploy.xml
slib-tools/slib-tools-sml-toolkit/src/main/resources/log4j.xml
slib-tools/slib-tools-sml-toolkit/src/main/resources/sml-toolkit-constants.properties
slib-tools/slib-tools-sml-toolkit/src/test/resources/log4j.xml
slib-utils/pom.xml
slib-utils/src/main/java/slib/utils/Pair.java
slib-utils/src/main/java/slib/utils/ex/SLIB_Ex_Critic.java
slib-utils/src/main/java/slib/utils/ex/SLIB_Ex_Warning.java
slib-utils/src/main/java/slib/utils/ex/SLIB_Exception.java
slib-utils/src/main/java/slib/utils/i/CheckableValidity.java
slib-utils/src/main/java/slib/utils/i/Conf.java
slib-utils/src/main/java/slib/utils/i/Parametrable.java
slib-utils/src/main/java/slib/utils/impl/BigFileReader.java
slib-utils/src/main/java/slib/utils/impl/IO_RuntimeException.java
slib-utils/src/main/java/slib/utils/impl/MatrixDouble.java
slib-utils/src/main/java/slib/utils/impl/MatrixDynamic.java
slib-utils/src/main/java/slib/utils/impl/OBOconstants.java
slib-utils/src/main/java/slib/utils/impl/OProperty.java
slib-utils/src/main/java/slib/utils/impl/ParametrableImpl.java
slib-utils/src/main/java/slib/utils/impl/QueryEntry.java
slib-utils/src/main/java/slib/utils/impl/QueryFileIterator.java
slib-utils/src/main/java/slib/utils/impl/QueryIterator.java
slib-utils/src/main/java/slib/utils/impl/SetUtils.java
slib-utils/src/main/java/slib/utils/impl/Timer.java
slib-utils/src/main/java/slib/utils/impl/Util.java
slib-utils/src/main/java/slib/utils/impl/UtilDebug.java
slib-utils/src/main/java/slib/utils/threads/PoolLocker.java
slib-utils/src/main/java/slib/utils/threads/PoolWorker.java
slib-utils/src/main/java/slib/utils/threads/ThreadManager.java
slib-utils/src/main/resources/log4j.xml
slib-utils/src/test/resources/log4j.xml
src/main/assembly/all-jar.xml
src/main/assembly/onejar.xml
src/main/assembly/sdk.xml
Download
Click the following link to download slib-master.zip.
slib-master.zip