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README.md
SourceForDevelopment.R
build/Architecture.txt
build/CTest.R
build/Checklist.TXT
build/Cranberries.txt
build/Ferber4.RData
build/Fragmente.R
build/JGR.jar
build/JRI.jar
build/README.TXT
build/data.R
build/devFeatures.txt
build/javaGD.jar
build/junit-4.10.jar
build/oldR.R
build/swingx-1.0.jar
gMCP.Rproj
pkg/.gitignore
pkg/CommonJavaJars/DESCRIPTION
pkg/CommonJavaJars/NAMESPACE
pkg/CommonJavaJars/R/loadJars.R
pkg/CommonJavaJars/R/showGuide.R
pkg/CommonJavaJars/inst/JRI/JRIEngine.jar
pkg/CommonJavaJars/inst/JRI/REngine.jar
pkg/CommonJavaJars/inst/R28/JRIEngine.jar
pkg/CommonJavaJars/inst/R28/REngine.jar
pkg/CommonJavaJars/inst/doc/CommonJavaJars.Rnw
pkg/CommonJavaJars/inst/java/NOTE
pkg/CommonJavaJars/inst/java/afcommons.jar
pkg/CommonJavaJars/inst/java/commons-collections-3.2.1.jar
pkg/CommonJavaJars/inst/java/commons-io-2.4.jar
pkg/CommonJavaJars/inst/java/commons-lang-2.6.jar
pkg/CommonJavaJars/inst/java/commons-logging-1.1.1.jar
pkg/CommonJavaJars/inst/java/commons-validator-1.4.0.jar
pkg/CommonJavaJars/inst/java/forms-1.2.0.jar
pkg/CommonJavaJars/inst/java/forms-1.6.0-J6.jar
pkg/CommonJavaJars/inst/java/iText-2.1.4.jar
pkg/CommonJavaJars/inst/java/jhlir.jar
pkg/CommonJavaJars/inst/java/jlatexmath-0.9.7.jar
pkg/CommonJavaJars/inst/java/jxlayer.jar
pkg/CommonJavaJars/inst/java/log4j-1.2.17.jar
pkg/CommonJavaJars/inst/java/poi-3.8-20120326.jar
pkg/CommonJavaJars/inst/java/swing-worker-1.1.jar
pkg/CommonJavaJars/man/CommonJavaJars-package.Rd
pkg/CommonJavaJars/man/loadJars.Rd
pkg/CommonJavaJars/man/showGuide.Rd
pkg/gMCP/.Rinstignore
pkg/gMCP/.gitignore
pkg/gMCP/DESCRIPTION
pkg/gMCP/INSTALL
pkg/gMCP/NAMESPACE
pkg/gMCP/NEWS
pkg/gMCP/R/analysis.R
pkg/gMCP/R/calcPower.R
pkg/gMCP/R/closure.R
pkg/gMCP/R/convertFromOldClassDefinition.R
pkg/gMCP/R/doRUnitTests.R
pkg/gMCP/R/exampleGraphs.R
pkg/gMCP/R/gACT-internal.R
pkg/gMCP/R/gMCP.R
pkg/gMCP/R/gPAD.R
pkg/gMCP/R/generateBounds.R
pkg/gMCP/R/generatePvals.R
pkg/gMCP/R/generateTest.R
pkg/gMCP/R/generateWeights.R
pkg/gMCP/R/graph2latex.R
pkg/gMCP/R/graphMCP.R
pkg/gMCP/R/graphTest.R
pkg/gMCP/R/helperGUI.R
pkg/gMCP/R/matrix2graph.R
pkg/gMCP/R/misc.R
pkg/gMCP/R/modifyGraphs.R
pkg/gMCP/R/onLoad.R
pkg/gMCP/R/plotCI.R
pkg/gMCP/R/powerPlot.R
pkg/gMCP/R/rqmvnorm.R
pkg/gMCP/R/sampSize.R
pkg/gMCP/R/startGUIs.R
pkg/gMCP/R/subVariables.R
pkg/gMCP/TODO
pkg/gMCP/data/hydroquinone.rda
pkg/gMCP/data/simvastatin.rda
pkg/gMCP/inst/CITATION
pkg/gMCP/inst/References.html
pkg/gMCP/inst/build.xml
pkg/gMCP/inst/java-src/org/af/gMCP/config/Configuration.java
pkg/gMCP/inst/java-src/org/af/gMCP/config/GeneralConfig.java
pkg/gMCP/inst/java-src/org/af/gMCP/config/JavaConfig.java
pkg/gMCP/inst/java-src/org/af/gMCP/config/PlotConfig.java
pkg/gMCP/inst/java-src/org/af/gMCP/config/SpecificConfig.java
pkg/gMCP/inst/java-src/org/af/gMCP/config/VersionComparator.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/AboutDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/CreateGraphGUI.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/DebugTextConsole.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/ErrorDialogChooseLevel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/ErrorDialogGMCP.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/JSplitPaneBugWorkAround.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/MenuBarMGraph.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/RCallServicesREngineWrapper.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/RControl.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/ReproducableLog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/commons-logging-verbose.properties
pkg/gMCP/inst/java-src/org/af/gMCP/gui/commons-logging.properties
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/AnalysisDialogFactory.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/AnalysisDialogListenerFactory.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/ContrastColorRenderer.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/ContrastDialog2.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/ContrastTable.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/ContrastTableModel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/GroupingBox.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/GroupingListener.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/LevelOrderListener.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/LevelOrderSL.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/LevelSelectBox.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/ROptionBox.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/StatMethodDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/contrasts/VarSelectBox.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/datatable/CellEditorE.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/datatable/CloseTabPanel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/datatable/DataFramePanel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/datatable/DataTable.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/datatable/DataTableModel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/datatable/EpsilonTableCellRenderer.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/datatable/RDataFrameRef.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/datatable/RowModel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/datatable/SingleDataFramePanel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/AdjustedPValueDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/AlternativesDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/ColorChooseDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/DialogConfIntEstVar.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/GraphSendToArchiveDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/GroupDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/ImagePanel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/InfoDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/LoadGraphFromArchiveDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/MatrixCreationDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/NewVersionDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/PowerDialogParameterUncertainty.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/PowerParameterPanel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/PowersettingsToXML.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/RObjectLoadingDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/RearrangeNodesDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/RejectedDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/TellAboutOnlineUpate.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/TextFileViewer.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/VariableDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/VariableNameDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/DView.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/Edge.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/EdgeWeight.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/GraphMCP.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/GraphPanel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/GraphView.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/LaTeXTool.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/NetList.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/NetListPopUpMenu.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/NetListSelectionPopUpMenu.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/Node.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/NodeListener.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/PPanel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/PView.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/Physics.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/PrintableObject.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/SubFamily.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/UpdateEdge.java
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pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/WrongInputException.java
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pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/annotations/Line.java
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pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/annotations/Rectangle.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/graph/annotations/Text.java
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pkg/gMCP/inst/java-src/org/af/gMCP/gui/options/NumericPanel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/options/OptionsDialog.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/options/OptionsPanel.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/options/SetLookAndFeelException.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/options/SetPropertiesException.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/pdf/PDFGenerator.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/pdf/PDFViewerStarter.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/pdf/Plot.java
pkg/gMCP/inst/java-src/org/af/gMCP/gui/pdf/Result.java
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pkg/gMCP/inst/java-src/org/af/gMCP/gui/power/PDistPanel.java
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pkg/gMCP/inst/java-src/tests/DataTableTest.java
pkg/gMCP/inst/java-src/tests/EdgeTest.java
pkg/gMCP/inst/java-src/tests/InteractionTest.java
pkg/gMCP/inst/java-src/tests/LoadSaveTest.java
pkg/gMCP/inst/java-src/tests/NetListTest.java
pkg/gMCP/inst/java-src/tests/NodeTest.java
pkg/gMCP/inst/java-src/tests/OptionPaneTest.java
pkg/gMCP/inst/java-src/tests/PPanelTest.java
pkg/gMCP/inst/java-src/tests/PowerTest.java
pkg/gMCP/inst/java-src/tests/RControlTest.java
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test/minimal/example.R
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www/Analysis.png
www/CI.png
www/Correlation.png
www/Description.png
www/ExampleGraphsWallpaper.png
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www/ExampleGraphsWallpaper2.png
www/GUI.png
www/GraphCreation.png
www/LaTeXCode.png
www/Matrix.png
www/Report.png
www/SequencePower2.png
www/VariableSubstitution.png
www/WeightsAndPValues.png
www/index.php
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