Download HiCGraph Free Java Code

build.xml//from  www. j  av a 2  s .c o m
lib/GPLv3licence.txt
lib/asm-1.5.3.jar
lib/biojava3-core-3.0.jar
lib/cglib-2.1_3.jar
lib/collections-generic-4.01.jar
lib/colt-1.2.0.jar
lib/commons-dbcp-1.2.2.jar
lib/commons-math-2.2.jar
lib/commons-pool-1.3.jar
lib/concurrent-1.3.4.jar
lib/ensembl-config-1.09-sources.jar
lib/ensembl-config-1.09.jar
lib/ensembl-data-access-1.09-javadoc.jar
lib/ensembl-data-access-1.09-sources.jar
lib/ensembl-data-access-1.09.jar
lib/ensembl-data-access-interface-1.09-javadoc.jar
lib/ensembl-data-access-interface-1.09-sources.jar
lib/ensembl-data-access-interface-1.09.jar
lib/ensembl-datamapper-1.09-javadoc.jar
lib/ensembl-datamapper-1.09-sources.jar
lib/ensembl-datamapper-1.09.jar
lib/ensembl-datasource-aware-model-1.09-javadoc.jar
lib/ensembl-datasource-aware-model-1.09-sources.jar
lib/ensembl-datasource-aware-model-1.09.jar
lib/ensembl-model-1.09-javadoc.jar
lib/ensembl-model-1.09-sources.jar
lib/ensembl-model-1.09.jar
lib/ensembl-test-1.09-sources.jar
lib/google-collections-1.0.jar
lib/j3d-core-1.3.1.jar
lib/jung-3d-2.0.1.jar
lib/jung-3d-demos-2.0.1.jar
lib/jung-algorithms-2.0.1.jar
lib/jung-api-2.0.1.jar
lib/jung-graph-impl-2.0.1.jar
lib/jung-io-2.0.1.jar
lib/jung-jai-2.0.1.jar
lib/jung-jai-samples-2.0.1.jar
lib/jung-samples-2.0.1.jar
lib/jung-visualization-2.0.1.jar
lib/log4j-1.2.16.jar
lib/mybatis-3.0.2.jar
lib/mysql-connector-java-5.1.6.jar
lib/stax-api-1.0.1.jar
lib/vecmath-1.3.1.jar
lib/wstx-asl-3.2.6.jar
run.sh
src/com/spartango/ensembl/model/Chromosome.java
src/com/spartango/ensembl/model/Gene.java
src/com/spartango/ensembl/model/Genome.java
src/com/spartango/ensembl/raw/EnsemblParser.java
src/com/spartango/hicgraph/analysis/cluster/ClusterConsumer.java
src/com/spartango/hicgraph/analysis/cluster/Clusterer.java
src/com/spartango/hicgraph/analysis/cluster/CoefficientClusterer.java
src/com/spartango/hicgraph/analysis/inference/TransitiveInferenceEngine.java
src/com/spartango/hicgraph/analysis/stat/StatisticGatherer.java
src/com/spartango/hicgraph/data/filters/IntraCompartmentFilter.java
src/com/spartango/hicgraph/data/filters/IntrachromosomalFilter.java
src/com/spartango/hicgraph/data/filters/ReadFilter.java
src/com/spartango/hicgraph/data/gene/GeneBinner.java
src/com/spartango/hicgraph/data/raw/ControlDataSource.java
src/com/spartango/hicgraph/data/raw/HiCCompartmentMap.java
src/com/spartango/hicgraph/data/raw/HiCDataConsumer.java
src/com/spartango/hicgraph/data/raw/HiCDataSource.java
src/com/spartango/hicgraph/data/raw/HiCParser.java
src/com/spartango/hicgraph/data/raw/HiCRead.java
src/com/spartango/hicgraph/deploy/Main.java
src/com/spartango/hicgraph/graph/BinaryGraphBuilder.java
src/com/spartango/hicgraph/graph/GraphBuilder.java
src/com/spartango/hicgraph/graph/GraphConsumer.java
src/com/spartango/hicgraph/graph/RelationDataSource.java
src/com/spartango/hicgraph/model/ChromatinCompartment.java
src/com/spartango/hicgraph/model/ChromatinGraph.java
src/com/spartango/hicgraph/model/ChromatinLocation.java
src/com/spartango/hicgraph/model/ChromatinRelation.java
src/com/spartango/hicgraph/visualization/GraphImageRenderer.java