Download BIDE 2D Free Java Code
Description
BIDE 2D : Bayesian Inference of Differential Expression in 2D PAGE.
Source Files
The download file BIDE-2D-master.zip has the following entries.
COPYING//w ww . j a v a 2s .co m
TODO
example/config.txt
example/example.csv
lib/commons-lang3-3.1.jar
lib/commons-math3-3.0.jar
lib/guava-11.0.2.jar
src/bide/core/GlobalMLMain.java
src/bide/core/Likelihood.java
src/bide/core/MCMC.java
src/bide/core/MHRatio.java
src/bide/core/Setting.java
src/bide/core/par/AbstractSavePar.java
src/bide/core/par/CurrentPar.java
src/bide/core/par/ParGlobal.java
src/bide/core/par/ParSpot.java
src/bide/core/par/Parameter.java
src/bide/core/par/SavePar.java
src/bide/core/par/SaveParGlobal.java
src/bide/core/par/SaveParLocal.java
src/bide/core/par/Spot.java
src/bide/core/par/TunePar.java
src/bide/hpd/HeapSort.java
src/bide/hpd/MainAnalysisResultHPD.java
src/bide/hpd/TraceDistribution.java
src/bide/logger/NumberColumn.java
src/bide/logger/PerformanceLogger.java
src/bide/logger/TabFormatter.java
src/bide/math/Constant.java
src/bide/math/Distribution.java
src/bide/math/ErrorFunction.java
src/bide/math/ExpUniExpDistribution.java
src/bide/math/ExponentialDistribution.java
src/bide/math/GammaDistribution.java
src/bide/math/GammaFunction.java
src/bide/math/InverseGammaDistribution.java
src/bide/math/NormalDistribution.java
src/bide/math/RandomNumberGenerator.java
src/bide/math/Transformation.java
src/bide/math/TwoExpDistribution.java
src/bide/math/UniformDistribution.java
src/bide/math/modelDist/GlobalDeltaDistribution.java
src/bide/math/modelDist/GlobalMeanDistribution.java
src/bide/math/modelDist/ProbabilityOfExpression.java
src/bide/prior/PriorBeta.java
src/bide/prior/PriorDist.java
src/bide/prior/PriorExp.java
src/bide/prior/PriorGamma.java
src/bide/prior/PriorInvGamma.java
src/bide/prior/PriorNormal.java
src/bide/prior/PriorUniform.java
src/bide/proposal/ProposalDist.java
src/bide/proposal/ProposalExp.java
src/bide/proposal/ProposalNormal.java
src/bide/proposal/ProposalScale.java
src/bide/proposal/ProposalUniform.java
src/bide/simulation/GelSetting.java
src/bide/simulation/RealPar.java
src/bide/simulation/Simulation.java
src/bide/simulation/SimulationMain.java
src/test/core/AllTests.java
src/test/core/AllTestsCore.java
src/test/core/LikelihoodTest.java
src/test/core/MHRatioTest.java
src/test/core/par/AllTestsCorePar.java
src/test/core/par/CurrentParTest.java
src/test/core/par/ParGlobalTest.java
src/test/core/par/ParSpotTest.java
src/test/core/par/SaveParGlobalTest.java
src/test/core/par/SaveParLocalTest.java
src/test/logger/NumberColumnTest.java
src/test/math/AllTestsMath.java
src/test/math/ExpUniExpDistributionTest.java
src/test/math/TransformationTest.java
src/test/prior/PriorBetaTest.java
Download
Click the following link to download BIDE-2D-master.zip.
BIDE-2D-master.zip