Download seqware-pipeline-0.6.1.jar
seqware/seqware-pipeline-0.6.1.jar.zip( 1,843 k)
The download jar file contains the following class files or Java source files.
META-INF/LICENSE.txt
META-INF/LICENSE.txt
META-INF/LICENSE.txt
META-INF/MANIFEST.MF
META-INF/NOTICE.txt
META-INF/NOTICE.txt
META-INF/maven/commons-lang/commons-lang/pom.properties
META-INF/maven/commons-lang/commons-lang/pom.xml
META-INF/maven/net.sf.jopt-simple/jopt-simple/pom.properties
META-INF/maven/net.sf.jopt-simple/jopt-simple/pom.xml
META-INF/maven/org.apache.commons/commons-compress/pom.properties
META-INF/maven/org.apache.commons/commons-compress/pom.xml
bsh.BSHAllocationExpression.class
bsh.BSHAmbiguousName.class
bsh.BSHArguments.class
bsh.BSHArrayDimensions.class
bsh.BSHArrayInitializer.class
bsh.BSHAssignment.class
bsh.BSHBinaryExpression.class
bsh.BSHBlock.class
bsh.BSHCastExpression.class
bsh.BSHClassDeclaration.class
bsh.BSHEnhancedForStatement.class
bsh.BSHForStatement.class
bsh.BSHFormalComment.class
bsh.BSHFormalParameter.class
bsh.BSHFormalParameters.class
bsh.BSHIfStatement.class
bsh.BSHImportDeclaration.class
bsh.BSHLiteral.class
bsh.BSHMethodDeclaration.class
bsh.BSHMethodInvocation.class
bsh.BSHPackageDeclaration.class
bsh.BSHPrimaryExpression.class
bsh.BSHPrimarySuffix.class
bsh.BSHPrimitiveType.class
bsh.BSHReturnStatement.class
bsh.BSHReturnType.class
bsh.BSHStatementExpressionList.class
bsh.BSHSwitchLabel.class
bsh.BSHSwitchStatement.class
bsh.BSHTernaryExpression.class
bsh.BSHThrowStatement.class
bsh.BSHTryStatement.class
bsh.BSHType.class
bsh.BSHTypedVariableDeclaration.class
bsh.BSHUnaryExpression.class
bsh.BSHVariableDeclarator.class
bsh.BSHWhileStatement.class
bsh.BlockNameSpace.class
bsh.BshClassManager.class
bsh.BshIterator.class
bsh.BshMethod.class
bsh.CallStack.class
bsh.Capabilities.class
bsh.ClassGenerator.class
bsh.ClassGeneratorImpl.class
bsh.ClassGeneratorUtil.class
bsh.ClassIdentifier.class
bsh.ClassPathException.class
bsh.CollectionManager.class
bsh.CommandLineReader.class
bsh.Console.class
bsh.ConsoleInterface.class
bsh.DelayedEvalBshMethod.class
bsh.EvalError.class
bsh.ExternalNameSpace.class
bsh.Interpreter.class
bsh.InterpreterError.class
bsh.JJTParserState.class
bsh.JavaCharStream.class
bsh.LHS.class
bsh.Modifiers.class
bsh.Name.class
bsh.NameSource.class
bsh.NameSpace.class
bsh.Node.class
bsh.ParseException.class
bsh.Parser.class
bsh.ParserConstants.class
bsh.ParserTokenManager.class
bsh.ParserTreeConstants.class
bsh.Primitive.class
bsh.Reflect.class
bsh.ReflectError.class
bsh.ReflectManager.class
bsh.Remote.class
bsh.ReturnControl.class
bsh.SimpleNode.class
bsh.StringUtil.class
bsh.TargetError.class
bsh.This.class
bsh.Token.class
bsh.TokenMgrError.class
bsh.Types.class
bsh.UtilEvalError.class
bsh.UtilTargetError.class
bsh.Variable.class
bsh.XThis.class
bsh.classpath.BshClassLoader.class
bsh.classpath.BshClassPath.class
bsh.classpath.ClassManagerImpl.class
bsh.classpath.ClassPathListener.class
bsh.classpath.DiscreteFilesClassLoader.class
bsh.collection.CollectionIterator.class
bsh.collection.CollectionManagerImpl.class
bsh.commands.dir.class
bsh.org.objectweb.asm.ByteVector.class
bsh.org.objectweb.asm.ClassVisitor.class
bsh.org.objectweb.asm.ClassWriter.class
bsh.org.objectweb.asm.CodeVisitor.class
bsh.org.objectweb.asm.CodeWriter.class
bsh.org.objectweb.asm.Constants.class
bsh.org.objectweb.asm.Edge.class
bsh.org.objectweb.asm.Item.class
bsh.org.objectweb.asm.Label.class
bsh.org.objectweb.asm.Type.class
bsh.reflect.ReflectManagerImpl.class
bsh.servlet.BshServlet.class
bsh.servlet.SimpleTemplate.class
bsh.util.AWTConsole.class
bsh.util.AWTDemoApplet.class
bsh.util.AWTRemoteApplet.class
bsh.util.BeanShellBSFEngine.class
bsh.util.BshCanvas.class
bsh.util.ClassBrowser.class
bsh.util.GUIConsoleInterface.class
bsh.util.Httpd.class
bsh.util.HttpdConnection.class
bsh.util.JConsole.class
bsh.util.JDemoApplet.class
bsh.util.JRemoteApplet.class
bsh.util.NameCompletion.class
bsh.util.NameCompletionTable.class
bsh.util.Sessiond.class
bsh.util.SessiondConnection.class
bsh.util.Util.class
bsh/commands/addClassPath.bsh
bsh/commands/bg.bsh
bsh/commands/bind.bsh
bsh/commands/browseClass.bsh
bsh/commands/cat.bsh
bsh/commands/cd.bsh
bsh/commands/classBrowser.bsh
bsh/commands/clear.bsh
bsh/commands/cp.bsh
bsh/commands/debug.bsh
bsh/commands/desktop.bsh
bsh/commands/dirname.bsh
bsh/commands/editor.bsh
bsh/commands/error.bsh
bsh/commands/eval.bsh
bsh/commands/exec.bsh
bsh/commands/exit.bsh
bsh/commands/extend.bsh
bsh/commands/fontMenu.bsh
bsh/commands/frame.bsh
bsh/commands/getBshPrompt.bsh
bsh/commands/getClass.bsh
bsh/commands/getClassPath.bsh
bsh/commands/getResource.bsh
bsh/commands/getSourceFileInfo.bsh
bsh/commands/importCommands.bsh
bsh/commands/importObject.bsh
bsh/commands/javap.bsh
bsh/commands/load.bsh
bsh/commands/makeWorkspace.bsh
bsh/commands/mv.bsh
bsh/commands/object.bsh
bsh/commands/pathToFile.bsh
bsh/commands/print.bsh
bsh/commands/printBanner.bsh
bsh/commands/pwd.bsh
bsh/commands/reloadClasses.bsh
bsh/commands/rm.bsh
bsh/commands/run.bsh
bsh/commands/save.bsh
bsh/commands/server.bsh
bsh/commands/setAccessibility.bsh
bsh/commands/setClassPath.bsh
bsh/commands/setFont.bsh
bsh/commands/setNameCompletion.bsh
bsh/commands/setNameSpace.bsh
bsh/commands/setStrictJava.bsh
bsh/commands/show.bsh
bsh/commands/source.bsh
bsh/commands/sourceRelative.bsh
bsh/commands/thinBorder.bsh
bsh/commands/unset.bsh
bsh/commands/which.bsh
bsh/commands/workspaceEditor.bsh
bsh/servlet/error.template
bsh/servlet/getVersion.bsh
bsh/servlet/page.template
bsh/servlet/result.template
bsh/util/lib/awtconsole.html
bsh/util/lib/eye.jpg
bsh/util/lib/icon.gif
bsh/util/lib/jconsole.html
bsh/util/lib/remote.html
bsh/util/lib/script.gif
bsh/util/lib/small_bean_shell.gif
bsh/util/lib/splash.gif
bsh/util/lib/workspace.gif
com.beust.testng.TestNG.class
com.beust.testng.TestNGAntTask.class
com.thoughtworks.qdox.JavaDocBuilder.class
com.thoughtworks.qdox.Searcher.class
com.thoughtworks.qdox.ant.AbstractQdoxTask.class
com.thoughtworks.qdox.directorywalker.DirectoryScanner.class
com.thoughtworks.qdox.directorywalker.FileVisitor.class
com.thoughtworks.qdox.directorywalker.Filter.class
com.thoughtworks.qdox.directorywalker.SuffixFilter.class
com.thoughtworks.qdox.junit.APITestCase.class
com.thoughtworks.qdox.model.AbstractInheritableJavaEntity.class
com.thoughtworks.qdox.model.AbstractJavaEntity.class
com.thoughtworks.qdox.model.BeanProperty.class
com.thoughtworks.qdox.model.ClassLibrary.class
com.thoughtworks.qdox.model.DefaultDocletTag.class
com.thoughtworks.qdox.model.DefaultDocletTagFactory.class
com.thoughtworks.qdox.model.DocletTag.class
com.thoughtworks.qdox.model.DocletTagFactory.class
com.thoughtworks.qdox.model.IndentBuffer.class
com.thoughtworks.qdox.model.JavaClass.class
com.thoughtworks.qdox.model.JavaClassCache.class
com.thoughtworks.qdox.model.JavaClassParent.class
com.thoughtworks.qdox.model.JavaField.class
com.thoughtworks.qdox.model.JavaMethod.class
com.thoughtworks.qdox.model.JavaParameter.class
com.thoughtworks.qdox.model.JavaSource.class
com.thoughtworks.qdox.model.Member.class
com.thoughtworks.qdox.model.ModelBuilder.class
com.thoughtworks.qdox.model.Type.class
com.thoughtworks.qdox.model.util.OrderedMap.class
com.thoughtworks.qdox.model.util.TagParser.class
com.thoughtworks.qdox.parser.Builder.class
com.thoughtworks.qdox.parser.Lexer.class
com.thoughtworks.qdox.parser.ParseException.class
com.thoughtworks.qdox.parser.impl.JFlexLexer.class
com.thoughtworks.qdox.parser.impl.Parser.class
com.thoughtworks.qdox.parser.structs.ClassDef.class
com.thoughtworks.qdox.parser.structs.FieldDef.class
com.thoughtworks.qdox.parser.structs.LocatedDef.class
com.thoughtworks.qdox.parser.structs.MethodDef.class
com.thoughtworks.qdox.parser.structs.TagDef.class
com.thoughtworks.qdox.parser.structs.TypeDef.class
com.thoughtworks.qdox.tools.QDoxTester.class
freemarker.cache.CacheStorage.class
freemarker.cache.ClassTemplateLoader.class
freemarker.cache.ConcurrentCacheStorage.class
freemarker.cache.ConcurrentMapFactory.class
freemarker.cache.FileTemplateLoader.class
freemarker.cache.MruCacheStorage.class
freemarker.cache.MultiTemplateLoader.class
freemarker.cache.SoftCacheStorage.class
freemarker.cache.StatefulTemplateLoader.class
freemarker.cache.StringTemplateLoader.class
freemarker.cache.StrongCacheStorage.class
freemarker.cache.TemplateCache.class
freemarker.cache.TemplateLoader.class
freemarker.cache.URLTemplateLoader.class
freemarker.cache.URLTemplateSource.class
freemarker.cache.WebappTemplateLoader.class
freemarker.core.AddConcatExpression.class
freemarker.core.AndExpression.class
freemarker.core.ArithmeticEngine.class
freemarker.core.ArithmeticExpression.class
freemarker.core.Assignment.class
freemarker.core.AssignmentInstruction.class
freemarker.core.AttemptBlock.class
freemarker.core.BlockAssignment.class
freemarker.core.BodyInstruction.class
freemarker.core.BooleanExpression.class
freemarker.core.BooleanLiteral.class
freemarker.core.BreakInstruction.class
freemarker.core.BuiltIn.class
freemarker.core.BuiltinVariable.class
freemarker.core.Case.class
freemarker.core.CollectionAndSequence.class
freemarker.core.CommandLine.class
freemarker.core.Comment.class
freemarker.core.ComparisonExpression.class
freemarker.core.CompressedBlock.class
freemarker.core.ConditionalBlock.class
freemarker.core.Configurable.class
freemarker.core.CustomAttribute.class
freemarker.core.DebugBreak.class
freemarker.core.DefaultToExpression.class
freemarker.core.DollarVariable.class
freemarker.core.Dot.class
freemarker.core.DynamicKeyName.class
freemarker.core.Environment.class
freemarker.core.EscapeBlock.class
freemarker.core.EvaluationUtil.class
freemarker.core.ExistsExpression.class
freemarker.core.Expression.class
freemarker.core.FMParser.class
freemarker.core.FMParserConstants.class
freemarker.core.FMParserTokenManager.class
freemarker.core.FallbackInstruction.class
freemarker.core.FlushInstruction.class
freemarker.core.FreeMarkerTree.class
freemarker.core.HashLiteral.class
freemarker.core.Identifier.class
freemarker.core.IfBlock.class
freemarker.core.Include.class
freemarker.core.Interpret.class
freemarker.core.InvalidReferenceException.class
freemarker.core.IteratorBlock.class
freemarker.core.LibraryLoad.class
freemarker.core.ListLiteral.class
freemarker.core.LocalContext.class
freemarker.core.Macro.class
freemarker.core.MethodCall.class
freemarker.core.MixedContent.class
freemarker.core.NewBI.class
freemarker.core.NoEscapeBlock.class
freemarker.core.NodeBuiltins.class
freemarker.core.NonBooleanException.class
freemarker.core.NonNumericalException.class
freemarker.core.NonStringException.class
freemarker.core.NotExpression.class
freemarker.core.NumberLiteral.class
freemarker.core.NumericalBuiltins.class
freemarker.core.NumericalOutput.class
freemarker.core.NumericalRange.class
freemarker.core.OrExpression.class
freemarker.core.ParentheticalExpression.class
freemarker.core.ParseException.class
freemarker.core.PropertySetting.class
freemarker.core.Range.class
freemarker.core.RecoveryBlock.class
freemarker.core.RecurseNode.class
freemarker.core.RegexBuiltins.class
freemarker.core.ReturnInstruction.class
freemarker.core.SequenceBuiltins.class
freemarker.core.SimpleCharStream.class
freemarker.core.StopException.class
freemarker.core.StopInstruction.class
freemarker.core.StringArraySequence.class
freemarker.core.StringBuiltins.class
freemarker.core.StringLiteral.class
freemarker.core.SwitchBlock.class
freemarker.core.TemplateElement.class
freemarker.core.TemplateObject.class
freemarker.core.TextBlock.class
freemarker.core.Token.class
freemarker.core.TokenMgrError.class
freemarker.core.TransformBlock.class
freemarker.core.TrimInstruction.class
freemarker.core.UnaryPlusMinusExpression.class
freemarker.core.UnifiedCall.class
freemarker.core.VisitNode.class
freemarker.debug.Breakpoint.class
freemarker.debug.DebugModel.class
freemarker.debug.DebuggedEnvironment.class
freemarker.debug.Debugger.class
freemarker.debug.DebuggerClient.class
freemarker.debug.DebuggerListener.class
freemarker.debug.EnvironmentSuspendedEvent.class
freemarker.debug.impl.DebuggerServer.class
freemarker.debug.impl.DebuggerService.class
freemarker.debug.impl.RmiDebugModelImpl.class
freemarker.debug.impl.RmiDebugModelImpl_Stub.class
freemarker.debug.impl.RmiDebuggedEnvironmentImpl.class
freemarker.debug.impl.RmiDebuggedEnvironmentImpl_Stub.class
freemarker.debug.impl.RmiDebuggerImpl.class
freemarker.debug.impl.RmiDebuggerImpl_Stub.class
freemarker.debug.impl.RmiDebuggerListenerImpl.class
freemarker.debug.impl.RmiDebuggerListenerImpl_Stub.class
freemarker.debug.impl.RmiDebuggerService.class
freemarker.ext.ant.FreemarkerXmlTask.class
freemarker.ext.ant.JythonAntTask.class
freemarker.ext.ant.UnlinkedJythonOperations.class
freemarker.ext.ant.UnlinkedJythonOperationsImpl.class
freemarker.ext.beans.ArrayModel.class
freemarker.ext.beans.BeanModel.class
freemarker.ext.beans.BeansModelCache.class
freemarker.ext.beans.BeansWrapper.class
freemarker.ext.beans.BooleanModel.class
freemarker.ext.beans.ClassBasedModelFactory.class
freemarker.ext.beans.ClassString.class
freemarker.ext.beans.CollectionAdapter.class
freemarker.ext.beans.CollectionModel.class
freemarker.ext.beans.DateModel.class
freemarker.ext.beans.EnumModels.class
freemarker.ext.beans.EnumerationModel.class
freemarker.ext.beans.HashAdapter.class
freemarker.ext.beans.InvalidPropertyException.class
freemarker.ext.beans.IteratorModel.class
freemarker.ext.beans.JavaRebelIntegration.class
freemarker.ext.beans.MapModel.class
freemarker.ext.beans.MemberAndArguments.class
freemarker.ext.beans.MethodMap.class
freemarker.ext.beans.MethodUtilities.class
freemarker.ext.beans.NumberModel.class
freemarker.ext.beans.OverloadedFixArgMethod.class
freemarker.ext.beans.OverloadedMethod.class
freemarker.ext.beans.OverloadedMethodModel.class
freemarker.ext.beans.OverloadedVarArgMethod.class
freemarker.ext.beans.ResourceBundleModel.class
freemarker.ext.beans.SequenceAdapter.class
freemarker.ext.beans.SetAdapter.class
freemarker.ext.beans.SimpleMapModel.class
freemarker.ext.beans.SimpleMemberModel.class
freemarker.ext.beans.SimpleMethodModel.class
freemarker.ext.beans.StaticModel.class
freemarker.ext.beans.StaticModels.class
freemarker.ext.beans.StringModel.class
freemarker.ext.dom.AttributeNodeModel.class
freemarker.ext.dom.CharacterDataNodeModel.class
freemarker.ext.dom.DocumentModel.class
freemarker.ext.dom.DocumentTypeModel.class
freemarker.ext.dom.ElementModel.class
freemarker.ext.dom.JaxenXPathSupport.class
freemarker.ext.dom.NodeListModel.class
freemarker.ext.dom.NodeModel.class
freemarker.ext.dom.NodeOutputter.class
freemarker.ext.dom.PINodeModel.class
freemarker.ext.dom.SunInternalXalanXPathSupport.class
freemarker.ext.dom.Transform.class
freemarker.ext.dom.XPathSupport.class
freemarker.ext.dom.XalanXPathSupport.class
freemarker.ext.jdom.NodeListModel.class
freemarker.ext.jsp.EventForwarding.class
freemarker.ext.jsp.FreeMarkerJspApplicationContext.class
freemarker.ext.jsp.FreeMarkerJspFactory.class
freemarker.ext.jsp.FreeMarkerJspFactory2.class
freemarker.ext.jsp.FreeMarkerJspFactory21.class
freemarker.ext.jsp.FreeMarkerPageContext.class
freemarker.ext.jsp.FreeMarkerPageContext1.class
freemarker.ext.jsp.FreeMarkerPageContext2.class
freemarker.ext.jsp.FreeMarkerPageContext21.class
freemarker.ext.jsp.FreemarkerTag.class
freemarker.ext.jsp.JspContextModel.class
freemarker.ext.jsp.JspTagModelBase.class
freemarker.ext.jsp.JspWriterAdapter.class
freemarker.ext.jsp.PageContextFactory.class
freemarker.ext.jsp.SimpleTagDirectiveModel.class
freemarker.ext.jsp.TagTransformModel.class
freemarker.ext.jsp.TaglibFactory.class
freemarker.ext.jython.JythonHashModel.class
freemarker.ext.jython.JythonModel.class
freemarker.ext.jython.JythonModelCache.class
freemarker.ext.jython.JythonNumberModel.class
freemarker.ext.jython.JythonSequenceModel.class
freemarker.ext.jython.JythonWrapper.class
freemarker.ext.rhino.RhinoFunctionModel.class
freemarker.ext.rhino.RhinoScriptableModel.class
freemarker.ext.rhino.RhinoWrapper.class
freemarker.ext.servlet.AllHttpScopesHashModel.class
freemarker.ext.servlet.FreemarkerServlet.class
freemarker.ext.servlet.HttpRequestHashModel.class
freemarker.ext.servlet.HttpRequestParametersHashModel.class
freemarker.ext.servlet.HttpSessionHashModel.class
freemarker.ext.servlet.IncludePage.class
freemarker.ext.servlet.ServletContextHashModel.class
freemarker.ext.util.IdentityHashMap.class
freemarker.ext.util.ModelCache.class
freemarker.ext.util.ModelFactory.class
freemarker.ext.util.WrapperTemplateModel.class
freemarker.ext.xml.Dom4jNavigator.class
freemarker.ext.xml.DomNavigator.class
freemarker.ext.xml.JaxenNamespaces.class
freemarker.ext.xml.JdomNavigator.class
freemarker.ext.xml.Namespaces.class
freemarker.ext.xml.Navigator.class
freemarker.ext.xml.NodeListModel.class
freemarker.ext.xml.NodeOperator.class
freemarker.log.AvalonLoggerFactory.class
freemarker.log.JDK14LoggerFactory.class
freemarker.log.Log4JLoggerFactory.class
freemarker.log.Logger.class
freemarker.log.LoggerFactory.class
freemarker.log.NullLoggerFactory.class
freemarker.template.AdapterTemplateModel.class
freemarker.template.Configuration.class
freemarker.template.DefaultObjectWrapper.class
freemarker.template.EmptyMap.class
freemarker.template.GeneralPurposeNothing.class
freemarker.template.LocalizedString.class
freemarker.template.ObjectWrapper.class
freemarker.template.ResourceBundleLocalizedString.class
freemarker.template.SettingStringParser.class
freemarker.template.SimpleCollection.class
freemarker.template.SimpleDate.class
freemarker.template.SimpleHash.class
freemarker.template.SimpleList.class
freemarker.template.SimpleNumber.class
freemarker.template.SimpleObjectWrapper.class
freemarker.template.SimpleScalar.class
freemarker.template.SimpleSequence.class
freemarker.template.Template.class
freemarker.template.TemplateBooleanModel.class
freemarker.template.TemplateCollectionModel.class
freemarker.template.TemplateDateModel.class
freemarker.template.TemplateDirectiveBody.class
freemarker.template.TemplateDirectiveModel.class
freemarker.template.TemplateException.class
freemarker.template.TemplateExceptionHandler.class
freemarker.template.TemplateHashModel.class
freemarker.template.TemplateHashModelEx.class
freemarker.template.TemplateMethodModel.class
freemarker.template.TemplateMethodModelEx.class
freemarker.template.TemplateModel.class
freemarker.template.TemplateModelAdapter.class
freemarker.template.TemplateModelException.class
freemarker.template.TemplateModelIterator.class
freemarker.template.TemplateModelListSequence.class
freemarker.template.TemplateNodeModel.class
freemarker.template.TemplateNumberModel.class
freemarker.template.TemplateScalarModel.class
freemarker.template.TemplateSequenceModel.class
freemarker.template.TemplateTransformModel.class
freemarker.template.TransformControl.class
freemarker.template.WrappingTemplateModel.class
freemarker.template.utility.CaptureOutput.class
freemarker.template.utility.ClassUtil.class
freemarker.template.utility.Collections12.class
freemarker.template.utility.Constants.class
freemarker.template.utility.DOMNodeModel.class
freemarker.template.utility.DeepUnwrap.class
freemarker.template.utility.Execute.class
freemarker.template.utility.HtmlEscape.class
freemarker.template.utility.JythonRuntime.class
freemarker.template.utility.NormalizeNewlines.class
freemarker.template.utility.ObjectConstructor.class
freemarker.template.utility.OptimizerUtil.class
freemarker.template.utility.SecurityUtilities.class
freemarker.template.utility.StandardCompress.class
freemarker.template.utility.StringUtil.class
freemarker.template.utility.ToCanonical.class
freemarker.template.utility.UndeclaredThrowableException.class
freemarker.template.utility.XmlEscape.class
freemarker/ext/beans/unsafeMethods.txt
freemarker/ext/jsp/web-app_2_2.dtd
freemarker/ext/jsp/web-app_2_3.dtd
freemarker/ext/jsp/web-app_2_4.xsd
freemarker/ext/jsp/web-app_2_5.xsd
freemarker/ext/jsp/web-jsptaglibrary_1_1.dtd
freemarker/ext/jsp/web-jsptaglibrary_1_2.dtd
freemarker/ext/jsp/web-jsptaglibrary_2_0.xsd
freemarker/ext/jsp/web-jsptaglibrary_2_1.xsd
freemarker/version.properties
joptsimple.AbstractOptionSpec.class
joptsimple.AlternativeLongOptionSpec.class
joptsimple.ArgumentAcceptingOptionSpec.class
joptsimple.ArgumentList.class
joptsimple.HelpFormatter.class
joptsimple.IllegalOptionClusterException.class
joptsimple.IllegalOptionSpecificationException.class
joptsimple.MultipleArgumentsForOptionException.class
joptsimple.NoArgumentOptionSpec.class
joptsimple.OptionArgumentConversionException.class
joptsimple.OptionException.class
joptsimple.OptionMissingRequiredArgumentException.class
joptsimple.OptionParser.class
joptsimple.OptionParserState.class
joptsimple.OptionSet.class
joptsimple.OptionSpec.class
joptsimple.OptionSpecBuilder.class
joptsimple.OptionSpecTokenizer.class
joptsimple.OptionSpecVisitor.class
joptsimple.OptionalArgumentOptionSpec.class
joptsimple.ParserRules.class
joptsimple.RequiredArgumentOptionSpec.class
joptsimple.UnrecognizedOptionException.class
joptsimple.ValueConversionException.class
joptsimple.ValueConverter.class
joptsimple.internal.AbbreviationMap.class
joptsimple.internal.Classes.class
joptsimple.internal.Column.class
joptsimple.internal.ColumnWidthCalculator.class
joptsimple.internal.ColumnarData.class
joptsimple.internal.ConstructorInvokingValueConverter.class
joptsimple.internal.MethodInvokingValueConverter.class
joptsimple.internal.Objects.class
joptsimple.internal.Reflection.class
joptsimple.internal.ReflectionException.class
joptsimple.internal.Strings.class
joptsimple.util.DateConverter.class
joptsimple.util.KeyValuePair.class
joptsimple.util.RegexMatcher.class
net.sourceforge.seqware.pipeline.daxgenerator.Daxgenerator.class
net.sourceforge.seqware.pipeline.metadata.Metadata.class
net.sourceforge.seqware.pipeline.metadata.MetadataDB.class
net.sourceforge.seqware.pipeline.metadata.MetadataInterface.class
net.sourceforge.seqware.pipeline.module.FileMetadata.class
net.sourceforge.seqware.pipeline.module.Module.class
net.sourceforge.seqware.pipeline.module.ModuleInterface.class
net.sourceforge.seqware.pipeline.module.ReturnValue.class
net.sourceforge.seqware.pipeline.modules.BamFilters.RemoveIndelsAndTrim.class
net.sourceforge.seqware.pipeline.modules.BamFilters.RemoveSingleIndelNotOnEnds.class
net.sourceforge.seqware.pipeline.modules.SamTools.class
net.sourceforge.seqware.pipeline.modules.alignment.Bfast.class
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org.testng.reporters.XMLConstants.class
org.testng.reporters.XMLReporter.class
org.testng.reporters.XMLStringBuffer.class
org.testng.reporters.XMLUtils.class
org.testng.reporters.util.StackTraceTools.class
org.testng.xml.ClassSuite.class
org.testng.xml.LaunchSuite.class
org.testng.xml.Parser.class
org.testng.xml.SuiteGenerator.class
org.testng.xml.TestNGContentHandler.class
org.testng.xml.XmlClass.class
org.testng.xml.XmlMethodSelector.class
org.testng.xml.XmlPackage.class
org.testng.xml.XmlSuite.class
org.testng.xml.XmlTest.class
testng-1.0.dtd
testng.css
testngtasks
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