Download mitcr-1.0.2.jar
mitcr/mitcr-1.0.2.jar.zip( 303 k)
The download jar file contains the following class files or Java source files.
META-INF/LICENSE-APACHE-2.0
META-INF/LICENSE-LGPL-3.0
META-INF/MANIFEST.MF
META-INF/maven/com.milaboratory/mitcr/pom.properties
META-INF/maven/com.milaboratory/mitcr/pom.xml
com.milaboratory.core.clone.Clone.class
com.milaboratory.core.clone.CloneCluster.class
com.milaboratory.core.clone.CloneClusterImpl.class
com.milaboratory.core.clone.CloneComparator.class
com.milaboratory.core.clone.CloneImpl.class
com.milaboratory.core.clone.CloneSet.class
com.milaboratory.core.clone.CloneSetClustered.class
com.milaboratory.core.clone.CloneSetClusteredImpl.class
com.milaboratory.core.clone.CloneSetImpl.class
com.milaboratory.core.segment.Allele.class
com.milaboratory.core.segment.AlleleSet.class
com.milaboratory.core.segment.CDR.class
com.milaboratory.core.segment.Chain.class
com.milaboratory.core.segment.DefaultSegmentLibrary.class
com.milaboratory.core.segment.Gene.class
com.milaboratory.core.segment.MD5ChecksumTestFail.class
com.milaboratory.core.segment.Molecule.class
com.milaboratory.core.segment.Segment.class
com.milaboratory.core.segment.SegmentFamily.class
com.milaboratory.core.segment.SegmentGroup.class
com.milaboratory.core.segment.SegmentGroupContainer.class
com.milaboratory.core.segment.SegmentGroupType.class
com.milaboratory.core.segment.SegmentLibrary.class
com.milaboratory.core.segment.SegmentSet.class
com.milaboratory.core.segment.SegmentUtils.class
com.milaboratory.core.segment.Species.class
com.milaboratory.core.segment.SpeciesSegmentGroup.class
com.milaboratory.mitcr.SimpleTest.class
com.milaboratory.mitcr.cdrextraction.CDR3ExtractionResult.class
com.milaboratory.mitcr.cdrextraction.CDR3ExtractionResultUtils.class
com.milaboratory.mitcr.cdrextraction.CDR3Extractor.class
com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactory.class
com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactoryFromSQPair.class
com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactoryFromSRead.class
com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromPRead.class
com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromSQPair.class
com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromSRead.class
com.milaboratory.mitcr.cdrextraction.CDR3ExtractorListener.class
com.milaboratory.mitcr.cdrextraction.CDR3ExtractorParameters.class
com.milaboratory.mitcr.cdrextraction.CoreCDR3Extractor.class
com.milaboratory.mitcr.cdrextraction.Strand.class
com.milaboratory.mitcr.cdrextraction.TargetRead.class
com.milaboratory.mitcr.cli.BuildInformation.class
com.milaboratory.mitcr.cli.BuildInformationProvider.class
com.milaboratory.mitcr.cli.ExportDetalizationLevel.class
com.milaboratory.mitcr.cli.Main.class
com.milaboratory.mitcr.cli.ParametersIO.class
com.milaboratory.mitcr.cli.ReportExporter.class
com.milaboratory.mitcr.cli.TabDelimitedExporter.class
com.milaboratory.mitcr.cli.TabDelimitedImporter.class
com.milaboratory.mitcr.clonegenerator.AccumulatorClone.class
com.milaboratory.mitcr.clonegenerator.AccumulatorCloneAvrg.class
com.milaboratory.mitcr.clonegenerator.AccumulatorCloneAvrgCompressed.class
com.milaboratory.mitcr.clonegenerator.AccumulatorCloneAvrgStrict.class
com.milaboratory.mitcr.clonegenerator.AccumulatorCloneFactory.class
com.milaboratory.mitcr.clonegenerator.AccumulatorCloneMax.class
com.milaboratory.mitcr.clonegenerator.AccumulatorCloneMaxCompressed.class
com.milaboratory.mitcr.clonegenerator.AccumulatorCloneMaxStrict.class
com.milaboratory.mitcr.clonegenerator.AccumulatorType.class
com.milaboratory.mitcr.clonegenerator.AverageQualityCalculator.class
com.milaboratory.mitcr.clonegenerator.BarcodeAggregator.class
com.milaboratory.mitcr.clonegenerator.BasicCloneGenerator.class
com.milaboratory.mitcr.clonegenerator.BasicCloneGeneratorParameters.class
com.milaboratory.mitcr.clonegenerator.CloneGenerator.class
com.milaboratory.mitcr.clonegenerator.CloneGeneratorFactory.class
com.milaboratory.mitcr.clonegenerator.CloneGeneratorListener.class
com.milaboratory.mitcr.clonegenerator.CloneGeneratorParameters.class
com.milaboratory.mitcr.clonegenerator.CloneGeneratorParametersDeserializer.class
com.milaboratory.mitcr.clonegenerator.CountVectorUtils.class
com.milaboratory.mitcr.clonegenerator.InMemoryResultAccumulator.class
com.milaboratory.mitcr.clonegenerator.LQFilteringOffCloneGenerator.class
com.milaboratory.mitcr.clonegenerator.LQFilteringOffCloneGeneratorParameters.class
com.milaboratory.mitcr.clonegenerator.LQMappingCloneGenerator.class
com.milaboratory.mitcr.clonegenerator.LQMappingCloneGeneratorParameters.class
com.milaboratory.mitcr.clonegenerator.OnHDDResultAccumulator.class
com.milaboratory.mitcr.clonegenerator.ResultsAccumulator.class
com.milaboratory.mitcr.clonegenerator.SequencingReadLink.class
com.milaboratory.mitcr.clonegenerator.TreePackingInfo.class
com.milaboratory.mitcr.clsexport.AbstractCloneSetMetadata.class
com.milaboratory.mitcr.clsexport.AbstractCloneSetMetadataIO.class
com.milaboratory.mitcr.clsexport.CloneClusterData.class
com.milaboratory.mitcr.clsexport.CloneClusterDataIO.class
com.milaboratory.mitcr.clsexport.CloneIO.class
com.milaboratory.mitcr.clsexport.ClsExporter.class
com.milaboratory.mitcr.clsexport.DataSetMetadata.class
com.milaboratory.mitcr.clsexport.DataSetMetadataIO.class
com.milaboratory.mitcr.clsexport.SCloneSetMetadata.class
com.milaboratory.mitcr.clsexport.SCloneSetMetadataIO.class
com.milaboratory.mitcr.clsexport.io.AbstractBinaryContainerIO.class
com.milaboratory.mitcr.clsexport.io.BinaryContainerIO.class
com.milaboratory.mitcr.clsexport.io.BinaryContainerReader.class
com.milaboratory.mitcr.clsexport.io.BinaryContainerWriter.class
com.milaboratory.mitcr.clsexport.io.DataInputPositioned.class
com.milaboratory.mitcr.clsexport.io.DataOutputPositioned.class
com.milaboratory.mitcr.clsexport.io.FixedBlockSize.class
com.milaboratory.mitcr.clsexport.io.IOUtill.class
com.milaboratory.mitcr.clsexport.io.IndexedContainerInput.class
com.milaboratory.mitcr.clsexport.io.IndexedContainerOutput.class
com.milaboratory.mitcr.clsexport.io.SignatureCheckError.class
com.milaboratory.mitcr.clsexport.io.WrongStructureException.class
com.milaboratory.mitcr.clsexport.io.impl.AbstractIndexedContainerInput.class
com.milaboratory.mitcr.clsexport.io.impl.BBBackedLongArrayList.class
com.milaboratory.mitcr.clsexport.io.impl.ByteArrayIndexedContainerInput.class
com.milaboratory.mitcr.clsexport.io.impl.DataInputPositionedStream.class
com.milaboratory.mitcr.clsexport.io.impl.DataOutputPositionedStream.class
com.milaboratory.mitcr.clsexport.io.impl.FileIndexedContainerInput.class
com.milaboratory.mitcr.clsexport.io.impl.FileIndexedContainerOutput.class
com.milaboratory.mitcr.clsexport.io.impl.IByteArrayOutputStream.class
com.milaboratory.mitcr.clsexport.io.serializers.Bit2ArrayIO.class
com.milaboratory.mitcr.clsexport.io.serializers.BitArrayIO.class
com.milaboratory.mitcr.clsexport.io.serializers.NucleotideSQPairIO.class
com.milaboratory.mitcr.clsexport.io.serializers.NucleotideSequenceIO.class
com.milaboratory.mitcr.clsexport.io.serializers.SegmentGroupContainerIO.class
com.milaboratory.mitcr.clsexport.io.serializers.SequenceQualityIO.class
com.milaboratory.mitcr.clsexport.io.util.ClassUtils.class
com.milaboratory.mitcr.clsexport.io.util.PrimitiveArrayIO.class
com.milaboratory.mitcr.clsexport.io.util.PrimitiveIO.class
com.milaboratory.mitcr.clsexport.io.util.PrimitiveMapIO.class
com.milaboratory.mitcr.clusterization.CloneClusterizationType.class
com.milaboratory.mitcr.clusterization.CloneClusterizer.class
com.milaboratory.mitcr.clusterization.CloneClusterizerFactory.class
com.milaboratory.mitcr.clusterization.ClusterizationListener.class
com.milaboratory.mitcr.clusterization.DummyCloneClusterizer.class
com.milaboratory.mitcr.clusterization.MonolayerCluster.class
com.milaboratory.mitcr.clusterization.PenaltyBasedFastClusterizer.class
com.milaboratory.mitcr.clusterization.PenaltyCalculator.class
com.milaboratory.mitcr.clusterization.penalty.NoClusterizationPenalty.class
com.milaboratory.mitcr.clusterization.penalty.OneMismatchPenaltyCalculator.class
com.milaboratory.mitcr.clusterization.penalty.VDJExplicitPenalty.class
com.milaboratory.mitcr.clusterization.penalty.VJMismatchPenalty.class
com.milaboratory.mitcr.pipeline.AnalysisListener.class
com.milaboratory.mitcr.pipeline.AnalysisListenerCombiner.class
com.milaboratory.mitcr.pipeline.DefaultAnalysisListener.class
com.milaboratory.mitcr.pipeline.FullPipeline.class
com.milaboratory.mitcr.pipeline.ParameterPresets.class
com.milaboratory.mitcr.pipeline.Parameters.class
com.milaboratory.mitcr.qualitystrategy.DummyQualityInterpretationStrategy.class
com.milaboratory.mitcr.qualitystrategy.GBNSBothSidesNucleotideInfoProvider.class
com.milaboratory.mitcr.qualitystrategy.GBNSNucleotideInfoProvider.class
com.milaboratory.mitcr.qualitystrategy.GBNSUtils.class
com.milaboratory.mitcr.qualitystrategy.GoodBadNucleotideSequence.class
com.milaboratory.mitcr.qualitystrategy.GoodBadNucleotideSequenceProvider.class
com.milaboratory.mitcr.qualitystrategy.IlluminaQualityInterpretationStrategy.class
com.milaboratory.mitcr.qualitystrategy.QualityInterpretationStrategy.class
com.milaboratory.mitcr.qualitystrategy.QualityInterpretationStrategyDeserializer.class
com.milaboratory.mitcr.statistics.AnalysisStatisticsAggregator.class
com.milaboratory.mitcr.statistics.CloneSetQualityControl.class
com.milaboratory.mitcr.util.evolver.AbstractGenerator.class
com.milaboratory.mitcr.util.evolver.ConditionsProvider.class
com.milaboratory.mitcr.util.evolver.Generator.class
com.milaboratory.mitcr.util.evolver.Reactor.class
com.milaboratory.mitcr.vdjmapping.AlignmentDirection.class
com.milaboratory.mitcr.vdjmapping.DSegmentMapper.class
com.milaboratory.mitcr.vdjmapping.DSegmentMapperFactory.class
com.milaboratory.mitcr.vdjmapping.DSegmentMapperParameters.class
com.milaboratory.mitcr.vdjmapping.PointSegmentMapper.class
com.milaboratory.mitcr.vdjmapping.SearchDirection.class
com.milaboratory.mitcr.vdjmapping.SegmentMapper.class
com.milaboratory.mitcr.vdjmapping.SegmentMappingResult.class
com.milaboratory.mitcr.vdjmapping.SimplestAlignment.class
com.milaboratory.mitcr.vdjmapping.VDJSegmentsMapper.class
com.milaboratory.mitcr.vdjmapping.VDJSegmentsMapperFactory.class
com.milaboratory.mitcr.vdjmapping.VDJSegmentsMappingResult.class
com.milaboratory.mitcr.vdjmapping.VJMapperListener.class
com.milaboratory.mitcr.vdjmapping.VJSegmentMapper.class
com.milaboratory.mitcr.vdjmapping.VJSegmentMapperFactory.class
com.milaboratory.mitcr.vdjmapping.VJSegmentMapperParameters.class
com.milaboratory.mitcr.vdjmapping.VJSegmentMappingResult.class
com.milaboratory.mitcr.vdjmapping.VJSegmentMappingResultFormatter.class
com.milaboratory.mitcr.vdjmapping.VJSegmentsMapperAdapter.class
com.milaboratory.mitcr.vdjmapping.ntree.NTreeNode.class
com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGenerator.class
com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadDeletion.class
com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadMismatch.class
com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadMismatch3B.class
com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorMatchOnly.class
com.milaboratory.mitcr.vdjmapping.ntree.NTreeSlider.class
com.milaboratory.mitcr.vdjmapping.ntree.NucleotideInfo.class
com.milaboratory.mitcr.vdjmapping.ntree.NucleotideInfoProvider.class
com.milaboratory.mitcr.vdjmapping.tree.CoreVJSegmentMapper.class
com.milaboratory.mitcr.vdjmapping.tree.OneDirectionSegmentMapper.class
com.milaboratory.mitcr.vdjmapping.tree.STree.class
com.milaboratory.mitcr.vdjmapping.tree.STreeResultHolder.class
com.milaboratory.mitcr.vdjmapping.tree.SmartAlignmentSegmentMapper.class
com.milaboratory.mitcr.vdjmapping.tree.SmartAlignmentSegmentMapperV2.class
com.milaboratory.mitcr.vdjmapping.tree.UniDirectionSegmentMapper.class
com.milaboratory.mitcr.vdjmapping.trivial.OneSideAligner.class
com.milaboratory.mitcr.vdjmapping.trivial.OneSideAlignmentResult.class
com.milaboratory.mitcr.vdjmapping.trivial.TrivialSegmentMapper.class
com.milaboratory.mitcr.vdjmapping.trivial.TrivialSegmentMapperFactory.class
com.milaboratory.util.NullOutputStream.class
com.milaboratory.util.TablePrintStreamAdapter.class
com.milaboratory.util.XMLException.class
mitcr
parameters.xsd
segments.gsl
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