Download micommons-0.9.jar
micommons/micommons-0.9.jar.zip( 158 k)
The download jar file contains the following class files or Java source files.
META-INF/MANIFEST.MF
META-INF/maven/com.milaboratory/micommons/pom.properties
META-INF/maven/com.milaboratory/micommons/pom.xml
com.milaboratory.core.sequence.AbstractSequenceBuilder.class
com.milaboratory.core.sequence.Alphabet.class
com.milaboratory.core.sequence.NucleotideSQPair.class
com.milaboratory.core.sequence.Sequence.class
com.milaboratory.core.sequence.SequenceBuilder.class
com.milaboratory.core.sequence.SequenceBuilderFactory.class
com.milaboratory.core.sequence.SequenceQuality.class
com.milaboratory.core.sequence.SequencingErrorType.class
com.milaboratory.core.sequence.aminoacid.AbstractAASequenceBuilder.class
com.milaboratory.core.sequence.aminoacid.AminoAcidAlphabet.class
com.milaboratory.core.sequence.aminoacid.AminoAcidSequence.class
com.milaboratory.core.sequence.aminoacid.AminoAcidSequenceImpl.class
com.milaboratory.core.sequence.aminoacid.CDRAminoAcidAlphabet.class
com.milaboratory.core.sequence.aminoacid.CDRAminoAcidSequence.class
com.milaboratory.core.sequence.aminoacid.CDRTriplet.class
com.milaboratory.core.sequence.aminoacid.Util.class
com.milaboratory.core.sequence.motif.LowQualityIndicator.class
com.milaboratory.core.sequence.motif.LowQualityIndicatorProvider.class
com.milaboratory.core.sequence.motif.NucleotideMotif.class
com.milaboratory.core.sequence.motif.NucleotideMotifBuilder.class
com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvanced.class
com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvancedWrapper.class
com.milaboratory.core.sequence.motif.NucleotideMotifSearchParameters.class
com.milaboratory.core.sequence.motif.NucleotideSQPairProvider.class
com.milaboratory.core.sequence.motif.NucleotideWildcards.class
com.milaboratory.core.sequence.motif.SSequencingReadBindings.class
com.milaboratory.core.sequence.nucleotide.NucleotideAlphabet.class
com.milaboratory.core.sequence.nucleotide.NucleotideAlphabetWithN.class
com.milaboratory.core.sequence.nucleotide.NucleotideSequence.class
com.milaboratory.core.sequence.nucleotide.NucleotideSequenceAggregator.class
com.milaboratory.core.sequence.nucleotide.NucleotideSequenceBuilder.class
com.milaboratory.core.sequence.nucleotide.NucleotideSequenceImpl.class
com.milaboratory.core.sequence.quality.SequenceQualityPhred.class
com.milaboratory.core.sequence.tree.DifferencePenalty.class
com.milaboratory.core.sequence.tree.LinearMinPenalty.class
com.milaboratory.core.sequence.tree.MutationGuide.class
com.milaboratory.core.sequence.tree.NucleotideSQPairSet.class
com.milaboratory.core.sequence.tree.NucleotideSQPairSetEvent.class
com.milaboratory.core.sequence.tree.NucleotideSQPairSetEventType.class
com.milaboratory.core.sequence.tree.NucleotideSQPairSetListener.class
com.milaboratory.core.sequence.tree.NucleotideSequencePenaltyTreeSet.class
com.milaboratory.core.sequence.tree.Penalty.class
com.milaboratory.core.sequence.tree.PenaltyUtils.class
com.milaboratory.core.sequence.tree.SequenceTreeMap.class
com.milaboratory.core.sequence.tree.TSSequenceTreeMap.class
com.milaboratory.core.sequence.util.NucleotideRCSequence.class
com.milaboratory.core.sequence.util.NucleotideSequenceGenerator.class
com.milaboratory.core.sequence.util.NucleotideSubSequence.class
com.milaboratory.core.sequence.util.SequenceMismatch.class
com.milaboratory.core.sequence.util.SequenceMismatchCollector.class
com.milaboratory.core.sequence.util.SequenceQualityUtils.class
com.milaboratory.core.sequence.util.SequencesUtils.class
com.milaboratory.core.sequence.util.SubSequenceQuality.class
com.milaboratory.core.sequence.util.Translator.class
com.milaboratory.core.sequencing.SequencingUtils.class
com.milaboratory.core.sequencing.WrongStructureException.class
com.milaboratory.core.sequencing.io.PSequencingDataReader.class
com.milaboratory.core.sequencing.io.SSequencingDataReader.class
com.milaboratory.core.sequencing.io.SSequencingDataReaderWithFlowgram.class
com.milaboratory.core.sequencing.io.SequencingDataReader.class
com.milaboratory.core.sequencing.io.fasta.FastaItem.class
com.milaboratory.core.sequencing.io.fasta.FastaItemsReader.class
com.milaboratory.core.sequencing.io.fasta.FastaReader.class
com.milaboratory.core.sequencing.io.fasta.FastaWriter.class
com.milaboratory.core.sequencing.io.fastq.Casava18InfoProvider.class
com.milaboratory.core.sequencing.io.fastq.IlluminaInfoProvider.class
com.milaboratory.core.sequencing.io.fastq.IlluminaInfoProviderFactory.class
com.milaboratory.core.sequencing.io.fastq.IlluminaReadInfo.class
com.milaboratory.core.sequencing.io.fastq.IlluminaReadInfoImpl.class
com.milaboratory.core.sequencing.io.fastq.NucleotideSQPairTrimmer.class
com.milaboratory.core.sequencing.io.fastq.PFastqReader.class
com.milaboratory.core.sequencing.io.fastq.PFastqWriter.class
com.milaboratory.core.sequencing.io.fastq.PSequencingReadsTrimmer.class
com.milaboratory.core.sequencing.io.fastq.PairedFiles.class
com.milaboratory.core.sequencing.io.fastq.QualityFormatGuesser.class
com.milaboratory.core.sequencing.io.fastq.SFastqReader.class
com.milaboratory.core.sequencing.io.fastq.SFastqWriter.class
com.milaboratory.core.sequencing.io.fastq.SSequencingReadTrimmer.class
com.milaboratory.core.sequencing.io.fastq.quality.AbstractSequenceQualityFactory.class
com.milaboratory.core.sequencing.io.fastq.quality.PhredSequenceQualityFactory.class
com.milaboratory.core.sequencing.io.fastq.quality.QualityStringFormat.class
com.milaboratory.core.sequencing.io.fastq.quality.SequenceQualityFactory.class
com.milaboratory.core.sequencing.io.fastq.quality.WrongQualityStringException.class
com.milaboratory.core.sequencing.io.sff.SFFClipper.class
com.milaboratory.core.sequencing.io.sff.SFFHeader.class
com.milaboratory.core.sequencing.io.sff.SFFRAWRead.class
com.milaboratory.core.sequencing.io.sff.SFFReader.class
com.milaboratory.core.sequencing.motif.NucleotideMotif.class
com.milaboratory.core.sequencing.motif.NucleotideMotifSearch.class
com.milaboratory.core.sequencing.motif.NucleotideMotifSearchOptions.class
com.milaboratory.core.sequencing.motif.NucleotideWildcards.class
com.milaboratory.core.sequencing.read.PDataSerRecord.class
com.milaboratory.core.sequencing.read.PSequencingRead.class
com.milaboratory.core.sequencing.read.PSequencingReadImpl.class
com.milaboratory.core.sequencing.read.SSequencingRead.class
com.milaboratory.core.sequencing.read.SSequencingReadImpl.class
com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgram.class
com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgramImpl.class
com.milaboratory.core.sequencing.read.SequencingRead.class
com.milaboratory.util.Bit2Array.class
com.milaboratory.util.BitArray.class
com.milaboratory.util.ByteBufferHolder.class
com.milaboratory.util.ByteBufferHolderCache.class
com.milaboratory.util.CanReportProgress.class
com.milaboratory.util.CanReportProgressAndStage.class
com.milaboratory.util.CompressionType.class
com.milaboratory.util.CoordProxy.class
com.milaboratory.util.CountingInputStream.class
com.milaboratory.util.Factory.class
com.milaboratory.util.HashFunctions.class
com.milaboratory.util.IndexRange.class
com.milaboratory.util.InfiniteLongArray.class
com.milaboratory.util.IntArrayList.class
com.milaboratory.util.LongArrayList.class
com.milaboratory.util.Math.class
com.milaboratory.util.NullOutputStream.class
com.milaboratory.util.ProgressReporter.class
com.milaboratory.util.ProgressReporterFactory.class
com.milaboratory.util.SmartProgressReporter.class
com.milaboratory.util.TablePrintStreamAdapter.class
com.milaboratory.util.XMLException.class
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